Expression| and splicing|based multi|tissue transcriptome|wide ...

(PDF) A splicing-based multi-tissue joint transcriptome-wide ...

Our results showed that for many genes, expression quantitative trait loci (eQTL) did not show significant impact on breast cancer risk, while ...

SUBSET-BASED CROSS-TISSUE TRANSCRIPTOME-WIDE ...

Transcriptome-wide association study (TWAS) is introduced to identify significant expression-trait associations through imputations.

and sex-specific colorectal cancer susceptibility genes with ...

Integrating multi-tissue expression and splicing data to prioritise anatomical subsite- and sex-specific colorectal cancer susceptibility ...

A multi-modal framework improves prediction of tissue-specific gene ...

To illustrate the utility, we implemented MOTPEC-based differential gene expression (DGE) analysis and genetics-anchored transcriptome-wide association study ( ...

The Cancer Genome Atlas Program (TCGA) - NCI

... multiple institutions. Over the ... Access TCGA data through the Genomic Data Commons Data Portal, along with web-based analysis and visualization tools.

A web-based integrative transcriptome analysis, RNAseqChef ...

... expression levels of circadian genes in SFN-treated cells in vitro (Fig. S10). SFN treatment reduced the expression of multiple circadian ...

TWAS / FUSION - Gusev Lab

Single-tissue gene expression · GTEx v8 multi-tissue expression · GTEx cross-tissue (sCCA) expression · TCGA tumor/normal expression · Multi-context (CONTENT) ...

The Human Protein Atlas

The atlas for all human proteins in cells and tissues using various omics: antibody-based imaging, transcriptomics, MS-based proteomics, and systems biology ...

Visium Spatial Platform - 10x Genomics

Simultaneous analysis of RNA and protein expression of FFPE tissues, using probe-based chemistry and tagged antibodies. Whole transcriptome; Protein expression.

Multispecies comparison of transcriptome expression data ... - Biostars

... based on the values in the control group. Simply because each ... These papers are e.g. comparing tissue type in different species without having ...

[PDF] Analysis of the Human Tissue-specific Expression by Genome ...

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics* · Linn Fagerberg, B. Hallström, +31 ...

A Multi-Tissue Gene Expression Atlas of Water Buffalo (Bubalus ...

Sequence Similarity of Genome and Transcriptome between Buffalo and Cattle. Based on the reference genomes of buffalo (UOA_WB_1) and cattle (ARS ...

Transcriptomics resources of human tissues and organs - EMBO Press

... wide data from independent genome‐wide transcriptome analyses of different tissues. ... genome‐based tissue expression consortium (GTEx, orange).

Transcriptome analysis of adult Caenorhabditis elegans cells ...

Finally, we developed a machine learning-based prediction tool for 76 sub-tissue cell types, which we used to predict cellular expression differences in IIS/ ...

Differential Splicing Analysis with RNA-Seq - YouTube

Julian Egger PhD Student Department of Medical Informatics & Clinic Epidemiology PhD Symposium Wednesday, September 12, 2018.

Multi-tissue transcriptome-wide association study identifies novel ...

... gene expression based on our TWAS results (column COLOC.PP4 in Supplementary Table S2). Conditional analyses provide additional support for ...

Predicting tissue-specific gene expression from whole blood ...

Transcriptome-based prognostic markers are starting to be developed for complex diseases (28–30), including cancer (31). While blood ...

MGI-Mouse Gene Expression Database (GXD)

Multiple Genome Viewer (MGV) · More. Phenotypes. Phenotypes, Alleles & Diseases ... Their operation is based on well-established life-cycle management ...

Co-expression networks reveal the tissue-specific ... - DSpace@MIT

... splicing and RNA binding genes, demonstrating their utility in unraveling regulation of splicing in the human transcriptome. Next, we used a Bayesian ...

Genome-wide alternative splicing analysis - Galaxy Training!

The majority of eukaryote genes have multiple transcriptional isoforms, and recent data indicate that each transcript of protein-coding genes ...