- What Do Foundation Single Cell Models Mean for Pharma Leaders?🔍
- Foundation Models for Biology to Support Bioinformatics🔍
- theislab/single|cell|transformer|papers🔍
- A Deeper Dive into Single Cell RNA Sequencing Foundation Models🔍
- Foundation models for bioinformatics🔍
- Harnessing the deep learning power of foundation models in single ...🔍
- Bio foundation models🔍
- Assessing the limits of zero|shot foundation models in single|cell ...🔍
Fine|Tuning Single|Cell Bio Foundation Models
What Do Foundation Single Cell Models Mean for Pharma Leaders?
The idea is that foundation models encapsulate some deeper knowledge about the structure of the problem - human language in this case.
Foundation Models for Biology to Support Bioinformatics
Building on the success of previous models like scBERT, which pioneered the use of Transformer architectures in single-cell RNA sequencing ( ...
theislab/single-cell-transformer-papers - GitHub
We provide a curated list of single-cell transformers and their evaluation results. We skip models that work only on bulk or images of slides data.
A Deeper Dive into Single Cell RNA Sequencing Foundation Models
Rebecca Boiarsky - A Deeper Dive into Single Cell RNA Sequencing Foundation Models. 686 views · 8 months ago ...more ...
Foundation models for bioinformatics - 2024 - Quantitative Biology
After chat-oriented fine-tuning and ... scGPT: toward building a foundation model for single-cell multi-omics using generative AI.
Harnessing the deep learning power of foundation models in single ...
Single-cell technologies generate vast amounts of omics data;. 'foundation models'1 emerge as a powerful tool for in-depth analysis.
Bio foundation models - definitions, nuance, and tactics
In general, these models are pre-trained on at least 5M cells in a self-supervised fashion and further fine tuned for downstream applications, ...
Assessing the limits of zero-shot foundation models in single-cell ...
The advent and success of foundation models such as GPT has sparked growing interest in their application to single-cell biology.
apeterswu/Awesome-Bio-Foundation-Models - GitHub
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on. 114 stars ...
MIA: David van Dijk,Single-cell analysis in the age of LLMs; Primer
Models, Inference and Algorithms, October 16, 2024 Broad Institute of MIT and Harvard Meeting: Single-cell analysis in the age of LLMs David ...
A Deep Dive into Single-Cell RNA Sequencing Foundation Models
... fine-tuned on specific tasks, have recently achieved unparalleled success on a wide array of applications, including in healthcare and biology. In this ...
Transformer-based Single-Cell Language Model: A Survey - arXiv
... cell embedding vectors from the dataset without fine-tuning ... Assessing the limits of zero-shot foundation models in single-cell biology.
Assessing the limits of zero shot foundation models in single cell ...
Kasia Kedzierska - Assessing the limits of zero shot foundation models in single cell biology. 323 views · 10 months ago ...more ...
Current opinions on large cellular models - Hao - Wiley Online Library
Inspired by LLMs, scGPT, as a foundation model, aims to first learn single-cell biology from the large-scale diverse pretraining dataset of ...
Towards Foundation Models in Biology: scGPT webinar - YouTube
Join Haotian Cui, lead author of scGPT from UToronto, as he dives into the inner workings of scGPT, a single-cell transformer model for ...
Towards Building a Foundation Model for Single-Cell Multi-omics ...
Utilizing the burgeoning single-cell sequencing data, we have pioneered the construction of a foundation model for single-cell biology, scGPT, which is based on ...
What are Foundation Models in Biology and Healthcare?
Instead of isolating a single target, foundation models can analyze the interaction of multiple biological networks. This is especially ...
scGPT – towards building a foundation model for single-cell multi ...
The model is generatively pre-trained on large-scale scRNA-seq data from cell atlases. For downstream applications, the pre-trained model parameters can be fine ...
Progress and opportunities of foundation models in bioinformatics
In biological contexts, few-shot fine-tuning is valuable when a model ... A single cell foundation model through generative pre-training on ...
A mini-review on perturbation modelling across single-cell omic ...
The acquired knowledge is subsequently utilised for fine-tuning in various ... Assessing the Limits of Zero-Shot Foundation Models in Single-Cell Biology.