Functional Annotation of the Arabidopsis Genome Using Controlled ...

GeneFarm, structural and functional annotation of Arabidopsis ... - HAL

Distribution of the gene families in the GeneFarm database according to the number of annotated paralogs in the Arabidopsis thaliana genome.

Discovering functional annotation through data mining of large scale ...

However, despite the increasing amount of genome-scale (omic) data, the lack of annotation providing insight on gene function remains a challenge for ...

Multi-omics network-based functional annotation of unknown ...

Benchmarking the prediction performance on recently characterized Arabidopsis thaliana genes, we showed that our method outperforms state-of-the ...

Arabidopsis thaliana | HSLS - Health Sciences Library System

Search and visualize data for high-throughput functional analysis of Arabidopsis, rice, and other plant genomes. GABI-Kat SimpleSearch -- an Arabidopsis ...

Complete reannotation of the Arabidopsis genome - OUCI

... Analysis of the genome sequence of the flowering plant Arabidopsis ... Functional annotation of the Arabidopsis genome using controlled vocabularies.

Transcriptome-guided annotation and functional classification of ...

We present a substantially improved annotation of Arabidopsis thaliana lncRNAs, generated by integrating 224 transcriptomes in multiple tissues, conditions, ...

Function Annotation of an SBP-box Gene in Arabidopsis Based on ...

(A) The distribution of the occurrence of the GTAC motif in 1000 sets of SPL-correlated genes promoters randomly selected from the Arabidopsis genome. (B) ...

Identification of putative Arabidopsis DEMETER target genes by ...

molecular function with the Arabidopsis whole genome ... Rhee, Functional annotation of the Arabidopsis genome using controlled vocabularies, ...

Organ identity and gene body methylation are key factors for ...

In an effort to discover new principles that govern gene expression in Arabidopsis thaliana, we integrated and analyzed publicly available whole ...

Using Arabidopsis GO annotations and TAIR GO tools - YouTube

... genome as well as various ways to analyze such sets of annotations ... GENE ONTOLOGY using TOPPGENE - Free tutorial. Genomics Guru•12K views.

Profiling ethylene-regulated gene expression in Arabidopsis ...

Ethylene-regulated gene expression in leaves of Arabidopsis thaliana was investigated with an expressed sequence tag-based microarray containing about 6000 ...

Regulatory network construction in Arabidopsis by using genome ...

Furthermore, we developed an approach for genetic regulatory network construction by combining eQTL mapping and regulator candidate gene selection. The power of ...

Arabidopsis thaliana - Functional Genomics Project

... Arabidopsis (funding more than ¤40 million):. Molecular genetic analysis of transcription factors controlling seed maturation in Arabidopsis thaliana.

A beginner's guide to eukaryotic genome annotation

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. ... approach to validating annotations and gene predictions in the ...

Functional annotation of proteins for signaling network inference in ...

To show the generalization and scalability of our neural network, we annotated the proteome of six species, including Arabidopsis thaliana, ...

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data

This new annotation consists of 31,132 protein coding gene models in addition to 2,089 genes with high similarity to transposable elements. Overall, ~87% of the ...

Functional Analysis for RNA-seq | Introduction to DGE - GitHub Pages

use global changes in gene expression by visualizing all genes being significantly up- or down-regulated in the context of external interaction data. Generally ...

Phylogenetic and functional analysis of tiller angle control ... - Frontiers

The Tiller Angle Control (TAC1) gene is duplicated in the Gossipum lineage and regulates branch angle with significant A-subgenome expression ...

The Bio-Analytic Resource: Instructions - BAR - University of Toronto

Provart, and from Genome Canada to the Arabidopsis Research Group at the Department of Cell and Systems Biology, University of Toronto. The BAR may be used to ...

Genome wide gene expression in artificially synthesized ... - OUCI

... Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol 135:745–755 https://doi.org/10.1104/pp.104.040071; Chen M, Ha M ...