New proposal of viral genome representation applied in the ...

Chaos game representation dataset of SARS-CoV-2 genome - OUCI

List of references · Mihara, Linking virus genomes with host taxonomy, Viruses, № 8 · Jeffrey, Chaos game representation of gene structure, Nucleic Acids Research ...

A dynamic nomenclature proposal for SARS-CoV-2 lineages to ...

No new data have been reported. The viral genome sequences used in this paper are publicly available from GISAID (http://gisaid.org). A ...

Convolutional Neural Network Applied to SARS-CoV-2 Sequence ...

Thus, this work proposes a high-accuracy technique to classify viruses and other organisms from a genome sequence using a deep learning convolutional neural ...

New proposal of viral genome representation applied in the ...

Tytuł: New proposal of viral genome representation applied in the classification of SARS-CoV-2 with deep learning; Autorzy: Luísa C. de Souza

Deep learning based on stacked sparse autoencoder applied to ...

In this work, we explored the utilization of image representations of the complete genome sequences as the SSAE input to provide a viral ...

The complexity landscape of viral genomes - Oxford Academic

This work provides a comprehensive landscape of the viral genome's complexity (or quantity of information), identifying the most redundant and complex groups.

VipTree - GenomeNet

Rectangular proteomic tree: a part of a dsDNA viruses tree, shown with virus names. Each of the inner nodes links to a genomic alignment of genomes that are ...

Targeted whole-genome recovery of single viral species in a ... - PNAS

Droplet microfluidics is used to compartmentalize individual viral genomes, amplify them inside droplets, and isolate the target genome. We dilute the sewage ...

Conservation of a Packaging Signal and the Viral Genome RNA ...

Fig. 3. Mutations in the putative PS of the VEEV genome have a strong negative effect on genomic RNA packaging. (A) Schematic representation of recombinant VEEV ...

Stacked Sparse Autoencoder applied to SARS-CoV-2 virus ... - UFRN

... new proposal for gene sequence representation based on Genomic Signal Processing (GSP) techniques was presented. Chaos Game Represent- ation (CGR) and ...

CSP New Investigator - DOE Joint Genome Institute

Proposed organisms should broaden phylogenetic representation among sequenced representatives or participate in processes directly relevant to DOE missions.

Deep learning based on stacked sparse autoencoder applied to ...

the output of the DNN, besides the biology fields and the bioinformatics area. 72. In the work presented in [11] was proposed a viral genome deep classifier ( ...

Data-driven recombination detection in viral genomes - Nature

Ideally, RecombinHunt can be applied to any virus for which an adequately large collection of viral genome sequences and a structured ...

sgDI-tector: defective interfering viral genome bioinformatics for ...

Kim et al.'s study applied nanopore direct RNA sequencing validated by DNA nanoball sequencing (MGI. NGS platform) to demonstrate that Vero cells infection with ...

Efficient Algorithms for Large Scale Analysis of Viral Genome ...

... proposed methods, we applied the ε-MSN ... In this paper we propose and validate a new entropy based method for clustering aligned viral.

Using artificial intelligence to document the hidden RNA virosphere

... applied to the identification of viruses from genomic and metagenomic data. ... new viral taxa with unprecedented genome organization. Virus Evol ...

Viral Genome Size Distribution Does not Correlate with the Antiquity ...

There are four circles by domain or phyla from phylogenetic tree of life which proportionally represent the largest and the smallest genome size from either RNA ...

Viral genome assembly and characterization hindrances from virus ...

Identification of viruses through next generation sequencing (NGS) relies on the use of well curated viral databases [1]. Recent advances and ...

Statistical Learning to Identify Omicron Mutations in SARS-CoV-2 ...

Application of Statistical Learning to Identify Omicron Mutations in SARS-CoV-2 Viral Genome Sequence Data From Populations in Africa and the ...

Generation and Functional Analysis of Defective Viral Genomes ...

Defective viral genomes (DVGs) have been identified in many RNA viruses as a major factor influencing antiviral immune response and viral ...