Pfam Domains in GENCODE Genes
GENCODE VM23 Track Settings - UCSC Genome Browser Home
... GENCODE Genes transcript sequences (such as knownToPfam, which identifies any Pfam domains found in the GENCODE Genes protein-coding transcripts). One can ...
GENCODE Basic includes all genes in the GENCODE gene set, with a representative subset of the transcripts ... DOMAINS - the source and identifer of any ...
(PDF) GENCODE: The reference human genome annotation for The ...
The GENCODE 7 release contains 20,687 protein-coding and 9640 long noncoding RNA loci and has 33,977 coding transcripts not represented in UCSC ...
GENCODE: the reference human genome annotation for The ENCODE Project. Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell ...
protein_domain_source from ensembldb and mapping with PFAM.db
all annotations in EnsDb databases are retrieved from Ensembl using the Ensembl perl API. Ensembl provides protein domains predicted/defined by ...
GTF / GFF3 files · It contains the basic gene annotation on the reference chromosomes, scaffolds, assembly patches and alternate loci (haplotypes) · This is a ...
PRANC domain (PF09372) - Pfam entry - InterPro - EMBL-EBI
... domains and important sites ... References. 1. F-box-like domains are present in most poxvirus ankyrin repeat proteins. Mercer AA, Fleming SB, Ueda N. Virus Genes ...
Core data. Proteins (UniProtKB) · Species (Proteomes) · Protein clusters (UniRef) · Sequence archive (UniParc) · Supporting data. Literature citations · Taxonomy ...