- Using an Epidemiological Model for Phylogenetic Inference Reveals ...🔍
- Phylogenetic Inference🔍
- Phylogenetics & Epidemiology🔍
- PRIME PubMed🔍
- Inferring epidemiological parameters from phylogenies using ...🔍
- BEAST and Phylogenetic inference in viral disease epidemiology🔍
- PhyloModels Archives🔍
- Phylogenetic Approaches to Molecular Epidemiology🔍
Using phylogenetic summary statistics for epidemiological inference
Using an Epidemiological Model for Phylogenetic Inference Reveals ...
In summary, this paper presents the first fully stochastic implementation of a classical epidemiological model for phylogenetic inference and ...
Phylogenetic Inference - Stanford Encyclopedia of Philosophy
Phylogenetic inference is the task of inferring this history, and as with other problems of inference, there are interesting and difficult questions regarding ...
data is required for inference. Core concept. Page 26. Summary. 17. • Provide powerful phylogenetic tools to the community. ‣ Make use of the available sequence ...
Genes, trees and infections: Molecular evidence in epidemiology
Molecular phylogenies constitute an important new way of tracking the progress of viral epidemics. The phylogenetic analysis of viral sequence data provides ...
PRIME PubMed | Inference of epidemiological dynamics based on ...
Inference of epidemiological dynamics based on simulated phylogenies using birth-death and coalescent models. PLoS Comput Biol. 2014 Nov; 10(11):e1003913.PC.
Inferring epidemiological parameters from phylogenies using ... - OUCI
GE Leventhal, Using an epidemiological model for phylogenetic inference ... S Aeschbacher, A novel approach for choosing summary statistics in approximate ...
BEAST and Phylogenetic inference in viral disease epidemiology
By the early 1990s, phylogenetic trees also began to play a role in molecular epidemiology, where they were used to understand the forces that shape patterns of ...
Using phylogenetic summary statistics for epidemiological inference ... Since the coining of the term phylodynamics, the use of phylogenies to understand ...
Phylogenetic Approaches to Molecular Epidemiology - SpringerLink
A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data. ... Phylogenetic Analysis Using Parsimony (*and Other Methods).
Chapter 6 Tools and Methods for Applied Genomic Epidemiological ...
... phylogenetic inference and genomic epidemiology. Rather than performing a ... Selecting appropriate contextual data to include in a phylogenetic analysis ...
Methods Combining Genomic and Epidemiological Data in ... - MDPI
In the non-phylogenetic family consisting of eight methods, pairwise genetic distances were estimated. In the phylogenetic families, transmission trees were ...
Phylogenetic analysis of SARS-CoV-2 data is difficult - Europe PMC
We find that it is difficult to infer a reliable phylogeny on these data due to the large number of sequences in conjunction with the low number of mutations.
Phylogenetic analysis has been used in criminal trials to exonerate or hold individuals. HIV forensics does have its limitations, i.e., it cannot be the sole ...
A review of phylodynamic models and applications
Phylodynamics requires an interdisciplinary understanding of phylogenetics, epidemiology, and statistical inference. It has also experi- enced more intense ...
Metagenomic Analysis Using Phylogenetic Placement—A Review of ...
The modern approach to phylogenetic tree inference is based on molecular sequence data, and uses stochastic models of sequence evolution (Arenas, 2015) to infer ...
A Bayesian inference method to estimate transmission trees with ...
Currently, genetic data is increasingly incorporated into epidemiological inference ... Summary statistics of simulated SARS-CoV-2 outbreaks in mink farms.
MAPLE: a phylogenetic tool for pandemic-scale genome data | EMBL
To speed up phylogenetic inference within genomic epidemiology, the researchers developed a new algorithm that worked better for closely related ...
Data Integration in Bayesian Phylogenetics - Annual Reviews
Researchers studying the evolution of viral pathogens and other organisms increasingly encounter and use large and complex data sets from ...
Phylogenetic Concepts and Tools Applied to Epidemiologic ...
In contrast, others have argued that phylogenies, especially phylogenies derived from genetic data from viral pathogens with short incubation times, can be used ...
Inference of Transmission Network Structure from HIV Phylogenetic ...
Our ABC framework used both topological and distance-based tree statistics for comparison between simulated and observed trees. Overall, our simulations showed ...