MGI|Mouse Functional Annotation using the Gene Ontology

We use the term "functional annotation of genes" to refer to the assignment of attributes to genes. The attributes include Gene Ontology terms, classified into ...

g:Profiler – a web server for functional enrichment analysis ... - BIIT

... analysis (ORA) or gene set enrichment analysis, on input gene list. It maps genes to known functional ... Ontology. g:GOSt supports close to 500 organisms ...

Renal Gene Ontology Annotation Initiative

... functional GO annotation for mammalian gene products implicated in renal development and disease. ... Mouse Genome Informatics Project. Jackson ...

Gene Ontology - an overview | ScienceDirect Topics

One tool developed to provide insights into the biology of diverse taxa is the Gene Ontology (GO) (Box 1) [1]. Annotating gene products with GO terms allows ...

Introduction to Gene Ontology | The Scientist Magazine®

Through the GOC-run GO, all biologists have a universal vocabulary to discuss the function of genes, even if they are working with vastly ...

Annotation of anonymous sequence data with Gene Ontology and ...

The functional annotation of genomic data has become a major task for the ever-growing number of sequencing projects.

On the Use of Gene Ontology Annotations to Assess Functional ...

Applying this metric, the authors concluded that paralogous genes within the mouse genome or the human genome are more functionally similar on ...

Exploring Gene Ontology GO annotations tools and resources

The Gene Ontology (GO) resource is the world's most comprehensive source of information about the function of gene products (proteins and ...

MSigDB - GSEA

The Molecular Signatures Database (MSigDB) is a resource of tens of thousands of annotated gene sets for use with GSEA software, divided into Human and Mouse ...

Functional Annotation with biomartr

Subsequently they can specify the attributes argument to retrieve a particular type of functional annotation (e.g. Gene Ontology terms). The ...

Annotation contributors - Gene Ontology

Candida Genome Database (CGD), CGD provides online access to genomic sequence data and manually curated functional information about genes and proteins of the ...

agement in the Mouse Genome Informatics (MGI) System - CEUR-WS

Additionally, for mouse gene products functional annota- tion, MGI start to use the Cell Ontology, the Mouse Embry- onic and Adult Anatomy Ontologies, the ...

g:Profiler – a web server for functional enrichment analysis ... - BIIT

Electronic GO annotations [IEA] -- A large proportion of functional annotations of Gene Ontology are assigned to genes using in silico curation methods and have ...

The Gene Ontology's Reference Genome Project: A Unified ... - PLOS

The Gene Ontology (GO) is a collaborative effort that provides structured vocabularies for annotating the molecular function, biological role, and cellular ...

Ontology-based validation and identification of regulatory phenotypes

We use functional and phenotypic annotations for mouse and human. We downloaded Gene Ontology (GO) (Ashburner et al., 2000) annotations from ...

MGI-GO Curators for Mouse

Through HUGOA (Human Gene Ontology Annotation), this knowledge base, used to ... Functional annotation of Drosophila gene products. dictyBase (Central ...

Best Practices in Manual Annotation with the Gene Ontology

The scope of the GO, though, is to capture the normal function of proteins. There are phenotype ontologies for human—HPO [13], mouse—MP [14] and ...

Gene Ontology - Wikipedia

... functional interpretation of experimental data using the GO, for example via enrichment analysis. GO is part of a larger classification effort, the ...

Strategies for biological annotation of mammalian systems ...

... annotation of mammalian systems: implementing gene ontologies in mouse genome informatics. ... Ontology annotation: mapping genomic regions to biological function ...

Formalization of gene regulation knowledge using ontologies and ...

... ontologies. For example, the Gene Ontology (GO) [13], [14] supports the interoperability of functional annotations across databases and species. Ontologies ...