TGenNorth/NASP

Understanding the Emergence of Multidrug-Resistant Candida

SNPs were identified and filtered using the publicly available pipeline NASP (http://tgennorth.github.io/NASP/) to remove positions that had ...

TGen North Clinical Laboratory - Google Sites

TNCL was established at TGen North, the home of TGen's Pathogen and Microbiome Division. ... We have helped CDC and other federal agencies develop a national ...

Genomics reveals historic and contemporary transmission dynamics ...

10 National Park Service, Yellowstone National ... 1 pipeline (https://github.com/ · TGenNorth/NASP), using default settings for each analysis ...

変異の自動解析パイプライン NASP - macでインフォマティクス

Northern Arizona SNP Pipeline. Contribute to TGenNorth/NASP development by creating an account on GitHub. github.com. #Anaconda ...

TGEN AND PARTNERS IN LONGEVITY CONSORTIUM RECEIVE ...

Funded by the National Institutes of Health's National Institute on Aging, the consortium has explored different approaches to human aging ...

M-15-Producing Escherichia coli Strain from the H30Rx Subclone of

(TGen), Flagstaff, Arizona, USAc; Department of Microbiology ... line (NASP) (http://TGenNorth.github.io/NASP). The verified.

Investigation of Outbreaks of Salmonella enterica Serovar ...

SNP pipelines NASP (20) and CSI Phylogeny 1.2 (21). A description of ... http://tgennorth.github.io/NASP. 21. Kaas RS, Leekitcharoenphon P, Aarestrup ...

Roundtable on Genomics and Precision Health - National Academies

Michelle will be staying on as a member. On the Roundtable, Cathy represents the National Society of Genetic Counselors and was past president in 2007. She is ...

Investigation and successful control of a Candida auris outbreak at a ...

SNP variants were identified using SAMtools 11 and filtered using the publicly available SNP analysis pipeline NASP (https://github.com/ · TGenNorth/NASP) to ...

Investigation of a possible outbreak of carbapenem-resistant ...

Identification of. SNP variants was performed using the GATK Unified Genotyper with filter- ing using NASP (http://tgennorth.github.io/NASP/) to ...

Complete Genome Sequence of a CTX-M-15-Producing Escherichia

(TGen), Flagstaff, Arizona, USAc; Department of Microbiology ... line (NASP) (http://TGenNorth.github.io/NASP). The verified.

Origin, evolution, and global transmission of community ... - jstor

morphisms (SNPs) using NASP (https://github.com/TGenNorth/NASP). If either the minimum coverage of 10 was not met, or if the variant was present in <90% of ...

Use of WGS data for investigation of a long-term NDM-1-producing

Genotyper with filtering using NASP (http://tgennorth.github.io/NASP/) to remove positions with less than×10 coverage and ,90% unambiguous ...

TGen North expands Arizona | Flinn Foundation

Bert Weinstein, Former Associate Director of Biology and Biotechnology Research Programs at Lawrence Livermore National Laboratory, said, “This ...

TGen and partners in Longevity Consortium receive $45 million grant

Funded by the National Institutes of Health's National Institute on Aging, the consortium has explored different approaches to human aging, from ...

The Effects of Signal Erosion and Core Genome Reduction on the ...

pseudomallei K96243 (19) with NUCmer (20) and processed with the Northern Arizona SNP Pipeline (http://tgennorth.github.io/NASPtgennorth.github.io/NASP) (30).

Whole-Genome Sequencing to Determine Origin of Multinational ...

... NASP (Northern Arizona SNP Pipeline, http://tgennorth.github.io/NASP/External Link ). The SNP calls were filtered in the final step of the pipeline and were ...

dkw289.pdf - Oxford Academic

Genotyper with filtering using NASP (http://tgennorth.github.io/NASP/) to remove positions with less than×10 coverage and ,90% unambiguous ...

TGen Welcomes Next Generation of Biomedical Leaders

... national awards and scholarships, and authorship on numerous scientific publications. “The Helios Scholars at TGen program provides an ...

Eighteenth century Yersinia pestis genomes reveal the long-term ...

These methods were wrapped by the Northern Arizona SNP Pipeline (NASP) (tgennorth.github.io/NASP). Phylogenetic analysis of the observance Y ...