Visualization Methods for DNA Sequences

Visualization, mapping and sequencing of megabase lengths of DNA

Prior to replication, a chromosome comprises a single length of DNA. We report on new methods for handling tens of kilobase to megabase ...

Symbolic Scatter Plot Helps Visualize Patterns Within DNA Sequence

David Cox of North Carolina State University has created a new visualization method for DNA sequences that he's calling "symbolic scatter plots".

Design of 2D Genome Visualization Tool for DNA Sequence Analysis

In this paper sequencing of genomic data requires methods to allow this data to be visualized and analyzed. With the emergence of genomic signal processing, ...

Volume visualization of multiple alignment of genomic DNA

We demonstrate our technique using multi-millions-basepair-long aligned DNA sequence data and compare it with traditional 1D line plots. The results show that ...

TCGR: A Novel DNA/RNA Visualization Technique - UMBC

TCGR is a new method for analyzing DNA/RNA sequences by pattern distribution and for assessing similarity between multiple sequences. Previous.

Visualizing millions of DNA sequences – in your web browser!

Sloan foundation), an interactive, exploratory data visualization framework for environmental sequence data. We're developing this tool in ...

What Tools/Libraries Do You Use To Visualize Genomic Feature ...

GView is useful for producing high-quality genome maps for use in publications and websites, or used as a visualization tool in a sequence ...

A Novel Visualization of DNA Sequences, Reflecting GC-Content

[32] used coding methods. Randic et al. [33, 34] proposed representations of DNA as maps. Besides degeneracy and loss of information, many representations need ...

Visualizations | DNA Sequencing Software - Sequencher from Gene ...

You can begin your visualizations using the Color Matrix Plot. This enables you to easily visualize the values in a dataset. Other plots include the Scatter ...

Ch04 DNA Sequence Visualization | PDF | Bioinformatics - Scribd

This chapter introduces various visualization schemes of symbolic DNA sequences, which are basically represented by character strings in conventional sequence ...

Case Study: Visualization of annotated DNA sequences

The use of standard information visualization techniques, such as linked windows, perspective walls, and smooth interaction, enables genome researchers to ...

Visualization and Comparison of DNA Sequences by Use of Three ...

eral DNA sequences are shown in Section 4. Finally the conclusion is given in Section 5. 2 Proposed TDT Visualization Method. The proposed scheme consists of ...

DNA Data Visualization (DDV): Software for Generating Web-Based ...

There are few existing visualization methods for raw nucleotide sequences of a whole genome or chromosome. Software for data visualization ...

[WSC19] Implementing a Visualizer for DNA Sequence Alignments

This project creates a visualization function that takes an input of a reference DNA sequence and multiple comparison sequences and outputs several different ...

Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA ...

For instance, progressive pairwise alignment techniques use a pre-computed phylogenetic tree as a “guide” to indicate the order in which multiple sequences ...

a serverless web tool for DNA sequence visualization - OUCI

To solve this problem, a number of methods have been proposed to transform DNA sequences into two-dimensional visualizations. DNAvisualization.org implements ...

Scaling and Visualization of Nucleotide Sequences

Algorithms for scaling and visualization of nucleotide sequences ... In addition, computational methods for visualizing both whole DNA and RNA ...

Analysis and visualization of DNA spectrograms - ACM Digital Library

In this paper we will show the application of spectral analysis and image processing in analyzing DNA sequences of specific structure. In addition, we extend ...

dynamical visualization of the dna sequence and its nucleotide content

Track-based visualization considers the sequence symbol-by-symbol, while the other two methods take into account how well nucleotides are ”mixed” in the ...

DNA Data Visualization (DDV): Software for Generating Web-Based ...

Summary of the visualization method. A source PNG image is generated to represent FASTA sequences. These source PNG images are then processed, including the ...