lightdock repositories

LightDock goes information-driven. - DBLP

Repositories · search · Search dblp · SPARQL queries · Lookup by ID · about ... "LightDock goes information-driven." help us. How can I correct ...

Docking Challenge | LightDock

LightDock macromolecular docking software official website. ... Integrative structure modeling (ISM) computationally combines data from multiple sources ...

Integrative Modeling of Membrane-associated Protein Assemblies

LightDock DFIRE docking score, right - HADDOCK score). For ... LightDock is also available at the Python Package Index Repository (PyPI).

Information-Driven Docking for TCR-pMHC Complex Prediction - PMC

Models from LightDock were generated using LightDock v0.8.0 (36) ... repository (45), and can be downloaded at https://data.sbgrid.org ...

Customizable Integrative Modelling Workflows with HADDOCK3

Open repository. Virtual Research Environment. Page 17. bonvinlab.org ... LightDock. Sampling. OpenMM. Refinement. Solvent. Refinement. Page 19. bonvinlab ...

Zymvol Biomodeling på LinkedIn

... repositories at: https://lnkd.in ... Screeshot of LightDock website section 'Tutorials', where different subsections appear: 'LightDock ...

Information-driven modeling of biomolecular complexes

To drive molecular docking, data from a variety of experimental or computational sources can be used. ... While LightDock's membrane protocol is designed to dock ...

A Deep Learning Platform for Augmentation of Structure Based Drug ...

Active Ligands. Active compounds were obtained from the DUD-E repository for available targets. (22) If not already present in ZINC15, SMILES ...

Protein–protein interaction prediction methods: from docking-based ...

1 are available from our figshare repository (Yamamori et al. 2022) ... LightDock: a new multi-scale approach to protein–protein docking.

Modeling Antibody-Antigen Complexes by Information-Driven Docking

the docking, namely HADDOCK and LightDock. We analyzed their ... deposited into the SBGrid data repository (Meyer et al., 2016) and ...

Brian Jimenez (@br_jimenez) / X

CTO at @Zymvol I develop #LightDock software & I'm the minion of my ... Teach yourself some OOP, don't add binaries to the repos (WTF), don't "import *".

Docking approaches for modeling multi-molecular assemblies

publicly funded repositories, such as the WHO COVID database with rights for ... LightDock: a new · multi-scale approach to protein–protein docking.

Docking With AlphaFold Structures: Oops | Science | AAAS

But it ain't easy. AlphaFold (and RoseTTAFold, et al.) are strikingly good at protein structure prediction, and later refinements have extended ...

Loading Dock Light Communication Systems - Vehicle Restraints

These cookies allow us to count visits and traffic sources so we can measure and improve the performance of our site. They help us to know which pages are ...

NeuralDock: Rapid and Conformation-Agnostic Docking of Small ...

The names of the repository/repositories and accession number(s) can ... DOCK 6: Impact of New Features and Current Docking Performance.

Integrative modeling of membrane-associated protein assemblies

Dock can allow for flexibility during docking through normal ... lightdock/lightdock-rust) shows a general speedup ... Package Index Repository (PyPI) https://pypi.

Information-Driven Docking for TCR-pMHC Complex Prediction.

Models from LightDock were generated using LightDock v0.8.0 (36) and run ... repository (45), and can be downloaded at https://data.sbgrid.org/dataset ...

Training – BioExcel

Code Repositories · Licenses; Tools. CP2K · CPMD · CWL Viewer · EGI ... LightDock+HADDOCK membrane proteins; HADDOCK3 documentation including ...

Integrative modeling of membrane-associated protein assemblies

It combines efficient, artificial intelligence-based rigid-body docking by LightDock ... Find sources citing this or sources cited in this.

Hive's Haven! | UBC-Okanagan 2023

To run our simulations, we used lightdock, a macromolecular docking framework written in python , ... The repository used to create this ...