CellRank Meets Experimental Time

The original CellRank version (v1) [Lange et al., 2022] was a framework to analyze cellular dynamics based on RNA velocity [Bergen et al., 2020, La Manno et al.

Advancing Single-Cell Analysis With CellRank 2

Researchers around Prof. Fabian Theis from Helmholtz Munich and the Technical University of Munich (TUM), have developed CellRank 2, ...

cellrank.kernels.PseudotimeKernel

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

Visualizing and Clustering Gene Expression Trends

CellRank Meets Experimental Time · Estimators. Toggle navigation of Estimators ... We used this dataset in our CellRank meets RNA velocity tutorial to compute a ...

CellRank for directed single-cell... - ISMB/ECCB 2021 - YouTube

CellRank for directed single-cell... - Marius Lange - Special Session 05 - Talk - ISMB/ECCB 2021 ; 9:35 · ISCB · 49 views ; 55:23 · ISCB · 395 views.

Estimating Fate Probabilities and Driver Genes

CellRank Meets Experimental Time · Estimators. Toggle navigation of Estimators ... We used this dataset in our CellRank meets RNA velocity tutorial to compute a ...

cellrank.pl.gene_trends

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.models.SKLearnModel

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.pl.circular_projection

Visualize fate probabilities in a circular embedding [Jaitin et al., 2014, Velten et al., 2017]. We arrange all computed terminal states evenly spaced around ...

cellrank.pl.heatmap

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.estimators.CFLARE

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.datasets.reprogramming_morris

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

Plotting - cellrank documentation - Read the Docs

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.datasets.reprogramming_schiebinger

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

CellRank 1.1.0 (2020-11-17)

cellrank.datasets.reprogramming() has been added to allow for easy reproducibility of the time & memory benchmarking results in our manuscript [ ...

cellrank.datasets.lung

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.datasets.zebrafish

Zebrafish embryogenesis assayed using drop-seq from [Farrell et al., 2018]. sc-RNA-seq time-series dataset, restricted to the axial mesoderm lineage, comprising ...

cellrank.datasets

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

Datasets - cellrank documentation - Read the Docs

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...

cellrank.pl.aggregate_fate_probabilities

CellRank Meets RNA Velocity · CellRank Meets Pseudotime · CellRank Meets CytoTRACE · CellRank Meets Experimental Time · Estimators. Toggle navigation of ...