Detecting correlated evolution on phylogenies

5.4: Testing for evolutionary correlations - Biology LibreTexts

Instead, most tests of character correlation rely on phylogenetic regression using one of two methods: phylogenetic independent contrasts ...

Download Preprint - EcoEvoRxiv

Key words: Macroevolution, phylogenetic comparative methods, hidden Markov models, rate heterogeneity, model adequacy. Correlated or dependent evolution on a ...

How traits shape trees - University of Colorado Boulder

Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc. R. Soc. Lond. B Biol. Sci. 255 ...

Pagel's 1994 Correlation method - Mesquite

Pagel, M. 1994. Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. Proc. R. Soc. London B 255: ...

With our analyses of correlated evolution, we aimed to detect ... (1994) Detecting correlated evolution on phylogenies: a general method for the ...

Assembly rules for protein networks derived from phylogenetic ...

a high probability of correctly identifying known functional links. The eukaryotic correlated evolution network we derive displays the ...

Bayesian inference of character evolution - Cell Press

Much recent progress in evolutionary biology is based on the inference of ancestral states and past transformations in important traits on phylogenetic ...

Introduction to Models of Continuous-Character Evolution - RevBayes

Is there evidence for variation in the rate of evolution across the branches of my phylogeny? Identifying the number, location, and magnitude of ...

Phylogenies, spatial autoregression, and the comparative method

Brownian motion computer simulation was used to test the statistical properties of a spatial autoregressive method in estimating evolutionary correlations ...

Unreplicated correlated evolution - UBC Zoology

Felsenstein J (1985). "Phylogenies and the comparative method." The American Naturalist, 125, pp. 1-15. Pagel M (1994). "Detecting correlated ...

arXiv:1110.4944v1 [q-bio.QM] 22 Oct 2011

harder to detect, so the phylogeny becomes ... Detecting Correlated Evolution on Phylogenies: A General Method for the Comparative Analysis.

Inferring evolutionary processes from phylogenies

The methods estimate parameters of statistical models for inferring correlated evolutionary change in continuously varying characters, for detecting correlated ...

Function to test for correlated evolution of binary traits - R

References. Pagel, M. (1994) Detecting correlated evolution on phylogenies: A general method for the comparative analysis of discrete characters. Proceedings of ...

Models and Methods for Analyzing Phenotypic Evolution in ...

Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters. ... APE: Analyses of Phylogenetics and ...

Here, using the most complete phylogeny of scleractinians, we reconstruct how evolutionary transitions between sexual systems (gonochorism ...

Testing for correlation between traits under directional evolution - HAL

Detecting Adaptive Evolution in Phylogenetic. Comparative Analysis Using the Ornstein–Uhlenbeck Model. Systematic Biology, 64(6):953–968 ...

The Origin and Correlated Evolution of Symbiosis and Coloniality in ...

The resultant phylogenetic mixture model from our analyses is more complex compared to any other model of sequence evolution previously used in ...

Predicting Functional Gene Links from Phylogenetic-Statistical ...

Correlated Evolution but Phylogenetic Method Does Not. The ... Pagel M (1994) Detecting correlated evolution on phylogenies: A general.

Strong phylogenetic signals and phylogenetic niche conservatism in ...

Various phylogenetic models have been built to detect patterns (conserved, random or convergent traits), rates (slow or rapid evolution) and ...

BIOINFORMATICS ORIGINAL PAPER

Results: We detect correlated evolution among a test set of pairs of yeast (Saccharomyces cerevisiae) genes, with a case study of. 21 eukaryotic genomes and ...