p|value|free FDR control on high|throughput data from two conditions

Adaptive False Discovery Rate Control under Independence and ...

oretically founded adaptive multiple testing procedures that control the FDR when the p-values are not independent. Keywords: multiple testing, false ...

Managing online multiple hypothesis testing using the onlineFDR ...

Methodologies have been developed to manage the multiple testing situation by adjusting the significance levels for a family of hypotheses, in order to control ...

False discovery rate‐controlled multiple testing for union null ...

False discovery rate (FDR) controlling procedures provide important statistical guarantees for replicability in signal identification based ...

Controlling the number of false discoveries: application to high ...

If we have two tied p-values and consider both orderings, then we have ... p-value for the permuted data over the subset R, i.e.,. "j = [1p∗(j) i. : i ...

False Discovery Rate and Localizing Power - arXiv

Here we consider and evaluate different strategies for FDR control with two-tailed tests, using both synthetic and real imaging data.

190-31: Estimate the False Discovery Rate Using SAS®

A microarray example using p-values from tests on 384 genes is given. INTRODUCTION. The false discovery rate (FDR) has received much attention as an alternative ...

Multiple Competition-Based FDR Control and Its Application to ...

2022, Genome Research, № 11-12, p. 2119-2133. Scopus. WoS. Crossref citations: 1 · Clipper: p-value-free FDR control on high-throughput data from two conditions.

False Discovery Rate Control

with φ(Z) = Fdr(Z) as in (2.13). 4.2 Benjamini and Hochberg's FDR Control Algorithm. We assume that our decision rule D produces a p-value pi for each ...

Multiple Testing and Filtering with Gene Expression Data

ylab='FDR-adjusted P-values') abline(0,1, lwd=2) legend('bottomright',c ... value) adjustment to p-values of tests that pass filter p. 1 … p r p r+1 … p.

Change-point testing for parallel data sets with FDR control

Under mild conditions, the asymptotic validity for both the false discovery proportion and FDR control is established. Extensive numerical results further ...

Comparing samples—part II | Nature Methods

The appropriate measure to report in multiple-testing scenarios is the q value, which is the FDR equivalent of the P value. Adjusted P values ...

No differential expression p−values 0.0 0.2 0.4 0.6 0.8 1.0 0 1 Lots ...

Bonferroni correction by testing only the most extreme p value against the strictest criterion, and the others against progressively less strict criteria.

I disagree, choosing your FDR cut-off after the results are known is no different (in practical terms) to choosing your critical p-value ...

Conditional calibration for false discovery rate control under ...

also controls FDR under arbitrary dependence between the p-values. ... Two simple sufficient conditions for fdr control. Electronic journal ...

False Discovery Rates - CiteSeerX

hypothesis tests on high-dimensional data sets. ... determining a data based p-value threshold controls the FDR at level α when the p-values corre-.

FDR control for Online Anomaly Detection - HAL

The p-value is compared to an adaptive threshold depending on the previous decisions. But this method is not applicable for conformal p-values.

The FDR-Linking Theorem - Wharton Statistics and Data Science

able p-value configuration for the BH procedure in terms of FDR control. ... Two simple sufficient conditions for FDR control. Electronic ...

Lecture 10: Multiple Testing

• To control FDR at level δ: p(j) "# j m. 2. Then find the test with the ... • The estimated q-value is a function of the p-value for that test and the ...

[PDF] False discovery rate control with multivariate p-values

Multivariate statistics are often available as well as necessary in hypothesis tests. We study how to use such statistics to control not ...

fdr and p-values for NGS comparison ttest - SEQanswers

The whole point of an FDR is to control for the limits of potential false positives within the subset of items deemed signficant. So an FDR ...