Analysis of Spatially Resolved

Statistical and machine learning methods for spatially resolved ...

Spatially resolved transcriptomics performs high-throughput measurement of transcriptomes while preserving spatial information about the tissue ...

Spatially resolved transcriptomics: advances and applications - PMC

According to a study benchmarking 16 integration methods, Tangram, gimVI, and SpaGE outperformed other integration methods when predicting the ...

Computational challenges and opportunities in spatially resolved ...

Spatially resolved transcriptomic data demand new computational analysis methods to derive biological insights. Here, we comment on these ...

Spatially resolved single-cell genomics and transcriptomics by ...

The high spatial resolution of these approaches further allows determination of the spatial organizations of the genome and transcriptome inside ...

Spatially resolved transcriptomics: a comprehensive review of their ...

In this review, we introduce recent progresses and challenges on SRT from the perspectives of technologies and bioinformatic tools, as well as the ...

Deep learning in spatially resolved transcriptomics - Oxford Academic

Spatially resolved transcriptomics (SRT) is a pioneering method for simultaneously studying morphological contexts and gene expression at single-cell precision.

Complete spatially resolved gene expression is not necessary for ...

Spatially resolved transcriptomics (SRT) technologies have revolutionized the study of tissue organization.

Spatially Resolved Single-Cell Omics: Methods, Challenges, and ...

Overlaying omics data onto spatial biological dimensions has been a promising technology to provide high-resolution insights into the ...

SRT-Server: powering the analysis of spatial transcriptomic data

Spatial resolved transcriptomics (SRT) encompasses a rapidly developing set of technologies that enable the measurement of gene expression ...

Efficient reliability analysis of spatially resolved transcriptomics at ...

Through comprehensive evaluation over a collection of SRT datasets generated by different platforms at various resolutions, SpaSEG shows ...

Advances in spatial transcriptomics and related data analysis ...

Feasible methods for obtaining a fine-grained assessment of spatial transcriptome can be generally classified into four primary categories ...

Benchmarking cell-type clustering methods for spatially resolved ...

In an unsupervised analysis of single-cell RNA sequencing data, clustering is performed with gene expression data alone to distinguish the ...

Spatially resolved analysis of microenvironmental gradient impact ...

We present an integrated microfluidic-based workflow that mimics extracellular pH gradients characteristic of solid tumors while enabling high-resolution live ...

Analysis and Visualization of Spatial Transcriptomic Data - Frontiers

A first step in the spatial transcriptomic analysis is to identify the cell type (for datasets of single-cell resolution) or cell mixture (for datasets of ...

Enhanced spatially resolved transcriptomics analysis by matching ...

We propose STForte, a pairwise graph autoencoding-based approach for SRT data analysis, which is capable of matching the information between expression ...

Bioinformatics approach to spatially resolved transcriptomics

The analysis pipelines diverge at the level of quantification matrix, downstream of which spatial techniques require specific tools to answer ...

Recent advances in spatially resolved transcriptomics - BMB Reports

First, in situ hybridization (ISH) is a technique that detects mRNA molecules in thick tissue samples to find gene expression patterns in single cells within ...

Orchestrating Spatially Resolved Transcriptomics Analysis with ...

In this workshop, we introduce a Bioconductor-based analysis workflow for ST data, which (i) is built around the SpatialExperiment S4 Bioconductor class.

Spatially resolved transcriptomics in immersive environments

Spatially resolved transcriptomics is an emerging class of high-throughput technologies that enable biologists to systematically investigate ...

Analysis of Spatially Resolved -omics Data in Partek Flow Software

Spatially resolved transcriptomics data analysis can be challenging. This video demonstrates how to analyze it easily.