Arabidopsis thaliana Assembly and Gene Annotation

Arabidopsis thaliana Assembly and Gene Annotation - Ensembl Plants

Arabidopsis is not of major agronomic significance, but its small genome size and ease of cultivation offer important advantages for basic research in genetics ...

Arabidopsis thaliana - Genome assembly: TAIR10 - Ensembl Plants

Arabidopsis is not of major agronomic significance, but its small genome size and ease of cultivation offer important advantages for basic research in genetics ...

TAIR10 - Genome - Assembly - NCBI

Arabidopsis thaliana (thale cress) genome assembly TAIR10 from The Arabidopsis Information Resource (TAIR) [GCA_000001735.1 GCF_000001735.3]

Chromosome-Scale Assembly and Annotation of Eight Arabidopsis ...

Chromosome-Scale Assembly and Annotation of Eight Arabidopsis thaliana Ecotypes ... Genome Biol Evol. 2024 Aug 5;16(8):evae169. doi: 10.1093/gbe/evae169.

The pan-genome and local adaptation of Arabidopsis thaliana - Nature

Arabidopsis thaliana serves as a model species for investigating various aspects of plant biology. However, the contribution of genomic ...

Chromosome-Scale Assembly and Annotation of Eight Arabidopsis ...

The plant Arabidopsis thaliana is a model system used by researchers through much of plant research. Recent efforts have focused on discovering the genomic ...

Chromosome-level assemblies of multiple Arabidopsis genomes ...

Each genome reveals between 13–17 Mb rearranged, and 5–6 Mb non-reference sequences introducing copy-number changes in ~5000 genes, including ~ ...

TAIR - Home

The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana.

A near-complete assembly of an Arabidopsis thaliana genome

In this near-complete genome assembly, a total of 27,629 protein-coding genes were annotated, of which 213 are novel. Many of these new genes are located within ...

Chromosome-level assembly of Arabidopsis thaliana Ler reveals the ...

thaliana. Moreover, we found 105 single-copy genes, which were only present in the reference sequence or the Ler assembly, and 334 single-copy ...

Arabidopsis Information Resource in 2024 - Oxford Academic

Our goal is to produce a “gold standard” functional annotation set that reflects the current state of knowledge about the Arabidopsis genome. At ...

High-quality Arabidopsis thaliana Genome Assembly with Nanopore ...

Arabidopsis thaliana is an important and long-established model species for plant molecular biology, genetics, epigenetics, and genomics.

Araport11: a complete reannotation of the Arabidopsis thaliana ...

The Arabidopsis thaliana genome sequence was initially assembled and annotated in 2000 by an international consortium (Arabidopsis Genome ...

The genome sequence of thale cress - Wellcome Open Research

We present a genome assembly of an Arabidopsis thaliana specimen (thale cress; Streptophyta; Magnoliopsida; Brassicales; Brassicaceae).

Arabidopsis thaliana TAIR10 - Phytozome

Genome Information. Assembly Source: TAIR; Assembly Version: TAIR9; Annotation Source: TAIR; Annotation Version: TAIR10; Total Scaffold Length ...

A near-complete assembly of an Arabidopsis thaliana genome

guided transcriptome assembly, were used for new gene prediction in the novel sequence. ... BUSCO: assessing genome assembly and annotation completeness ...

Genome Annotation at TAIR

The Arabidopsis genome was initially annotated by the Arabidopsis Genome Initiative (AGI) and later reannotated by TIGR in collaboration with MIPS and TAIR.

Best practices for improving genome annotation in non‐model plant ...

The first published plant genome, Arabidopsis thaliana (L.) Heynh., was released in 2000 (Arabidopsis Genome Initiative, 2000). Its small size ( ...

Tutorial: genome assembly and annotation of Arabidopsis thaliana ...

We present whole-genome assemblies of four divergent Arabidopsis thaliana strains that complement the 125-Mb reference genome sequence released a decade ago ...

1001 Arabidopsis Genomes Effort Hones Assembly, Annotation ...

... genome assembly for four Arabidopsis strains. As they reported in ... "One can exploit these whole-genome assemblies, using the sequences ...