Bioinformatics workflows for routine analysis of many samples

In QIAGEN CLC Workbenches, workflows are easily created and configured using a graphical editor (1, 2). Tools can be added through drag-and-drop ...

Validation of a Bioinformatics Workflow for Routine Analysis of ...

We analyzed a core validation dataset of 67 well-characterized samples typed by means of classical genotypic and/or phenotypic methods that were sequenced in- ...

A Practical Bioinformatics Workflow for Routine Analysis of Bacterial ...

For the evaluation of workflow repeatability and reproducibility, the bioinformatics workflow was run twice on the same dataset in the same and ...

A Practical Bioinformatics Workflow for Routine Analysis of Bacterial ...

In general, the establishment of this workflow is important and serves not only laboratories without bioinformatics infrastructure, but also scientists who are ...

Portable, reproducible and scalable bioinformatics workflows using ...

Bioinformatics workflows can support portable, reproducible and scalable analysis of omics datasets but using workflows can be challenging ...

3 Ways to Process Your Expression Data | QIAGEN Digital Insights

QIAGEN Digital Insights bioinformatics tools for transcriptomics support microarray and RNA-seq data analysis with a variety of specialized ...

Bioinformatics Workflow for Whole Genome Sequencing

The bioinformatics workflow for WGS falls into the following steps: (1) raw read quality control; (2) data preprocessing; (3) alignment; (4) variant calling; ( ...

Cluster Flow: A user-friendly bioinformatics workflow tool.

Existing tools require significant work to install and get running, typically needing pipeline scripts to be written from scratch before running any analysis.

pains of creating workflows? : r/bioinformatics - Reddit

This is a classic bioinformatics problem. Many people want to analyze data, but most are not able to do it. Lots of people have tried to make ...

Planning bioinformatics workflows using an expert system

Due to the increasing breadth and complexity of bioinformatics analyses, even routine pre-processing of data can be technically challenging. As one example, ...

Developing reproducible bioinformatics analysis workflows for ...

Such bioinformatics workflows take the primary and secondary input data through several computationally-intensive processing steps using ...

Introducing bioinformatics workflow management - YouTube

Discover more from the In Focus here: https://bit.ly/3b2sjfk Including a podcast on sculpting bioinformatics workflows for NGS data analysis ...

Simple user interfaces for slick bioinformatics workflows

Here we are going to look at packaging am example analysis pipelines into a text based user interface alongside some user prompts to ensure the right files are ...

Bioinformatics workflows for clinical applications in precision oncology

The availability of RNA sequencing data enables gene expression analysis as well as gene fusion detection in a tumor sample. Alignment and read pre- and post- ...

GoekeLab/bioinformatics-workflows: minimal example ... - GitHub

Here we provide basic proof-of-concept implementations for selected workflow managers. The analysis workflow is based on a small portion of an RNA-seq pipeline, ...

Ergatis: a web interface and scalable software system for ...

Workflow management systems (WMS) include software systems that execute and manage computational pipelines. These have become important tools in bioinformatics ...

Closha: bioinformatics workflow system for the analysis of massive ...

To address this challenge, we developed a cloud-based workflow management system, Closha, to provide fast and cost-effective analysis of massive ...

Design considerations for workflow management systems use in ...

Bioinformatics workflows are often heterogeneous in terms of the computational resources required for each task. For example, genome assembly ...

Bioinformatics : Standard analysis packages - OICR Genomics

If you're sequencing many samples at OICR and would like to have it run ... workflow/analysis routines. Please contact us for further details. Analysis ...

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical ...

Workflow performance was validated on a per-assay basis using a collection of 238 in-house-sequenced MTBC isolates, extensively characterized with conventional ...