Characterizing and Comparing Phylogenies from their Laplacian ...

We present a graph-theoretical approach that provides such a framework. We show how to construct the spectral density profile of a phylogenetic tree from its ...

Phylogenetic trees are central to many areas of biology, ranging from population genetics and epidemiology to microbiology, ecology, and macroevolution. The ...

Characterizing and Comparing Phylogenetic Trait Data from Their ...

We show how to construct the SDP of trait data on a phylogenetic tree from the normalized graph Laplacian. We demonstrate on simulated data the utility of the ...

(PDF) Characterizing and comparing phylogenies from their ...

and long-lasting applications. phylogenetics — diversiﬁcation — Inﬂuenza — phylodynamics — biodiversity —. microbiology — Laplacian .CC-BY-NC-ND 4.0 ...

Data -- Characterizing and comparing phylogenies from their ... - Dryad

We show how to construct the spectral density profile of a phylogenetic tree from its Laplacian graph. Using ultrametric simulated trees as well as non- ...

Characterizing and Comparing Phylogenetic Trait Data from Their ...

Our ability to infer patterns of phenotypes across phylogenetic clades is essential to how we infer the macroevolutionary processes governing ...

Characterizing and Comparing Phylogenetic Trait Data from Their ...

the spectral density profile of the graph Laplacian of the distance matrix of a phylogeny, ... Characterizing and Comparing Phylogenies from their Laplacian. 613.

Characterizing and comparing phylogenies from their Laplacian ...

Finally, we illustrate how the eigengap can identify modes of division within a given tree. As phylogenetic data continue to accumulate and to be integrated ...

Characterizing and Comparing Phylogenetic Trait Data from Their ...

Request PDF | Characterizing and Comparing Phylogenetic Trait Data from Their Normalized Laplacian Spectrum | The dissection of the mode and tempo of ...

Characterizing and comparing phylogenetic trait data from their ...

... phylogenetic tree from the normalized graph. Laplacian. We demonstrate on simulated data the utility of the spectral density profile to.

Characterizing and comparing phylogenetic trait data from ... - OUCI

Here we build on a recently introduced approach for using the phylogenetic spectral density profile to compare and characterize patterns of phylogenetic ...

Characterizing and comparing phylogenies from their Laplacian ...

Characterizing and comparing phylogenies from their Laplacian spectrum. Biology · Computer Science · Mathematics. Show More. Authors. Eric Lewitus,Jonathan ...

Characterizing and Comparing Phylogenetic Trait Data from Their ...

nMGL, Normalized modified graph Laplacian, The distance matrix of the phylogeny weighted by the differences in trait values between tips and normalized by the ...

Characterizing and Comparing Phylogenies from their ... - Altmetric

Characterizing and Comparing Phylogenies from their Laplacian Spectrum ; Mentioned by · twitter: 18 ; Citations. dimensions_citation: 77 ; Readers ...

Characterizing and comparing phylogenies from their Laplacian ...

Characterizing and comparing phylogenies from their Laplacian spectrum ... Syst Biol (2015) doi : 10.1093/sysbio/syv116. First published online : December 12, ...

an R package for macroevolutionary analyses on phylogenetic trees

Molecular Biology and Evolution, 28, 729–744. Lewitus, E. & Morlon, H. (2015) Characterizing and comparing phylogenies from their Laplacian spectrum. bioRxiv, ...

spectR: Spectral density plot of a phylogeny in RPANDA - rdrr.io

Computes the spectra of eigenvalues for the modified graph Laplacian of a phylogenetic ... References. Lewitus, E., Morlon, H., Characterizing and comparing ...

RPANDA: an R package for macroevolutionary analyses on ...

... the distinct branching patterns on the phylogeny by k ... (2015) Characterizing and comparing phylogenies from their Laplacian spectrum.

Spectral density plot of a phylogeny. - R

References. Lewitus, E., Morlon, H., Characterizing and comparing phylogenies from their Laplacian spectrum, bioRxiv doi: http://dx.doi.org/10.1101/026476 ...

Laplacian spectrum statistics, from RPANDA - Search R Project

Computes the distribution of eigenvalues for the modified graph Laplacian of a phylogenetic tree, and several summary statistics of this distribution.