Chromothripsis Explorer

Chromothripsis Explorer permits to explore and visualize the tumors comprised in the PCAWG cohort, including properties of the tumors (eg purity and ploidy),

Functionalities of the Chromothripsis Explorer a Interactive bar plot...

Download scientific diagram | Functionalities of the Chromothripsis Explorer a Interactive bar plot for visualization of chromothripsis rates for selected ...

A user guide for the online exploration and visualization of PCAWG ...

These tools are ICGC Data Portal, UCSC Xena, Chromothripsis Explorer, Expression Atlas, and PCAWG-Scout. We detail use cases and analyses ...

Comprehensive analysis of chromothripsis in 2,658 human cancers ...

... browser (or turn off compatibility mode in Internet Explorer). In ... a, Evidence of chromothripsis in chromosome 1 in a skin-melanoma ...

A user guide for the online exploration and visualization of PCAWG ...

The Chromothripsis Explorer is best for users who are looking for a global picture of somatic alterations in a tumor (e.g., large-scale ...

Pan-cancer analysis of whole genomes - Nature

Chromothripsis Explorer. Chromothripsis Explorer (http://compbio.med.harvard.edu/chromothripsis/) is a portal that allows structural ...

Unprecedented exploration generates most comprehensive map of ...

... Chromothripsis Explorer (compbio.med.harvard.edu/chromothripsis). ICGC – International Cancer Genome Consortium (https://icgc.org/) TCGA ...

CTLPScanner: a web server for chromothripsis-like pattern detection

(A) An example of detected chromothripsis event in chromosome 16 ... browser. This storage is often necessary for basic functionality of ...

A user's guide to the online resources for data exploration ... - bioRxiv

The Chromothripsis Explorer visualizes genome-wide mutational patterns, with a focus on complex genomic events, e.g., chromothripsis and ...

Unprecedented exploration generates most comprehensive map of ...

Chromothripsis Explorer (compbio.med.harvard.edu/chromothripsis). About IRB Barcelona. The Institute for Research in Biomedicine (IRB ...

Chromothripsis detection with multiple myeloma patients based on ...

... chromothripsis detection than CN breakpoints in a global chromosome arm. ... browser. This storage is often necessary for basic functionality of ...

Software | Park Lab | Computational Genomics | Harvard

For identification of chromothripsis events from whole-genome sequencing data. ... modENCODE chromatin data browser (http://compbio.med.harvard.edu/flychromatin/)

Long-read sequencing reveals chromothripsis in a molecularly ...

Constitutional chromothripsis event. (A) UCSC Genome Browser of the 7.3-Mb region involved in the constitutive complex chromosomal rearrangement ...

A user guide for the online exploration and visualization of PCAWG ...

... Chromothripsis Explorer, Expression Atlas, and PCAWG-Scout. We detail use cases and analyses for each tool, show how they incorporate outside resources from ...

A user guide for the online exploration and visualization of PCAWG ...

These tools are ICGC Data Portal, UCSC Xena, Chromothripsis Explorer, Expression Atlas, and PCAWG-Scout. We detail use cases and analyses for each tool, show ...

A user guide for the online exploration and visualization of PCAWG ...

... Chromothripsis Explorer, Expression Atlas, and PCAWG-Scout. We detail use cases and analyses for each tool, show how they incorporate ...

A user guide for the online exploration and visualization of PCAWG ...

These tools are ICGC Data Portal, UCSC Xena, Chromothripsis Explorer, Expression Atlas, and PCAWG-Scout. We detail use cases and analyses for each tool ...

Loss of RanGAP1 drives chromosome instability and rapid ...

... browser (https://syntenybrowser.jax.org/browser ). Key tumorigenic and suppressive genes in Chr1 affected by chromothripsis are shown as a Circos plot (left) ...

Operational detection and quantification of chromothripsis

As such, findings of chromothripsis are difficult to compare and ... Research Explorer The University of Manchester data protection policy.

Pan-cancer analysis of whole genomes

Chromothripsis Explorer. Chromothripsis Explorer (http://compbio.med.harvard.edu/ · chromothripsis/) is a portal that allows structural ...