DNA–DNA interactions
DNA–DNA interactions | The Aksimentiev Group
We combine fluorescence resonance energy transfer (FRET) measurements, precipitation assays, and molecular dynamics simulations to characterize the effect of ...
DNA interactions: understanding what your DNA is up to
DNA doesn't work alone, interacting with other nucleic acids – DNA and RNA – as well as different types of proteins. These interactions influence various ...
The forces that govern DNA double helix organization are being finally systematically measured. The non-specific longer-range interactions--such as ...
Interactions with DNA - an overview | ScienceDirect Topics
The interplay between protein and DNA are ubiquitous in nature and governs several cellular processes (replication, transcription, translation, chromosomal ...
Methods for Detecting Protein-DNA Interactions - US
The ChIP assay method allows analysis of DNA–protein interactions in living cells by treating the cells with formaldehyde or other crosslinking reagents in ...
Protein–DNA/RNA Interactions: An Overview of Investigation ... - NCBI
The present review proposes an overview of the approaches most commonly employed in proteomics applications for the identification of nucleic acid-binding ...
Protein:DNA Interactions - Promega Corporation
Chromatin immunoprecipitation (ChIP) is a method used to determine whether DNA-binding proteins, such as transcription factors, associate with a specific ...
Protein DNA Interaction - an overview | ScienceDirect Topics
The scientist should compare luciferase expression between conditions in which (1) no protein is present, (2) protein is present, and (3) the regulatory ...
Determining the specificity of protein–DNA interactions - Nature
Traditional methods for determining the specificity of DNA-binding proteins are slow and laborious, but several new high-throughput methods can provide ...
Understanding DNA interactions in crowded environments with a ...
We use a coarse-grained model of DNA to study the kinetics and thermodynamics of DNA duplex and hairpin formation in crowded environments.
Analysis of protein-DNA interactions in chromatin by UV induced ...
We present a workflow that allows mass spectrometric (MS) identification of proteins in direct contact with DNA in reconstituted and native chromatin after ...
DNA-binding protein - Wikipedia
DNA-binding proteins are proteins that have DNA-binding domains and thus have a specific or general affinity for single- or double-stranded DNA. ... Sequence- ...
DNA–protein interaction studies: a historical and comparative analysis
This review intends to provide a historical context and compile the methods that describe DNA–protein interactions according to the purpose of each approach.
Introduction to Protein-DNA Interactions: Structure, Thermodynamics ...
Describes what we know about protein–DNA interactions from the complementary perspectives of molecular and structural biology and bioinformatics.
Protein–DNA/RNA Interactions: An Overview of Investigation ...
The present review proposes an overview of the approaches most commonly employed in proteomics applications for the identification of nucleic acid-binding ...
Specificity of protein–DNA interactions in hypersaline environment ...
We identified the DNA motif recognized by the Halobactrium salinarum ROS-dependent transcription factor (hsRosR), determined the structure of several hsRosR– ...
Genome-Wide Mapping of in Vivo Protein-DNA Interactions - Science
To map these protein-DNA interactions comprehensively across entire mammalian genomes, we developed a large-scale chromatin immunoprecipitation ...
DNA–binding proteins - LUMICKS
We offer solutions that enable you to measure, manipulate, and visualize DNA-protein interaction in real-time and at the single-molecule level, with both high ...
DNA Interactions with Proteins - News-Medical
During the process of complex formation, hydrogen bonds between the polar amino acids and the atoms of the DNA molecule augment the affinity of ...
Overview of Protein-Nucleic Acid Interactions - US
Proteins interact with DNA and RNA through similar physical forces, which include electrostatic interactions (salt bridges), dipolar interactions (hydrogen ...