DNA Sequence Compression using ERGC and NRGC for Better ...

The compression results obtained in the algorithm show that the exact R2CP are one of the main hidden regularities in DNA sequences. The proposed DNA sequence ...

NRGC: a novel referential genome compression algorithm - PMC

The most recent algorithm ERGC divides both the target and the reference sequences into parts of equal size and finds one-to-one maps of similar ...

High-speed and high-ratio referential genome compression

... better than ERGC when structural variants with ... NRGC divide long sequences into fixed-size blocks to improve compression speed.

[PDF] ERGC: an efficient referential genome compression algorithm

The results on real genomes show that the proposed algorithm is indeed competitive and performs better than the best known algorithms for this problem and ...

Performance evaluation of three algorithms using various metrics

On the contrary, NRGC performs better than ERGC (and other not- able ... Reference-based genome compression for compressing a single genome sequence ...

Vertical lossless genomic data compression tools for assembled ...

In vertical mode, also known as delta or differential compression, the content of one or more sequences can be used as a search space to detect ...

High efficiency referential genome compression algorithm

... sequences are searched in both local and global matching strategies for better compression efficiency. ... In both figures we only present the data for ERGC, NRGC ...

HRCM: An Efficient Hybrid Referential Compression Method for ...

The to-be-compressed information extracted from stage one is matched with the corresponding information of the reference sequence. If more than ...

A randomized optimal k-mer indexing approach for efficient parallel ...

Use of IUPAC codes enables compression of genomic sequences in the FAST-ALL (FASTA) format. •. The COVID-19 virus (SARS-CoV-2) and the human ...

(PDF) NRGC: A novel referential genome compression algorithm

algorithm to compress genomic sequences effectively and efficiently. ... pressed data size. ... a reference-free genome compression algorithm.

HRCM: An Efficient Hybrid Referential Compression Method for ...

Experimental verification shows that HRCM is superior to the best-known methods in genome batch compression. Moreover,. HRCM memory ...

Sketch distance-based clustering of chromosomes for large genome ...

The compression ratio of reference-based compression on large scale genome datasets can be improved via reference selection by applying ...

Analysis of Compression Techniques for DNA Sequence ...

In the proposed work, the input DNA sequence is compressed by reconstructing the sequence into varied formats. Here the input DNA sequence is subjected to bit ...

HADC: A Hybrid Compression Approach for DNA Sequences

Although ERGC and NRGC are both effective genome compression algorithms that perform better than the best-known algorithms in most of the cases, ...

ERGC: an efficient referential genome compression algorithm - OUCI

Abstract Motivation: Genome sequencing has become faster and more affordable. Consequently, the number of available complete genomic sequences is increasing ...

What Is Best Current Dna Compression Algorithm? - Biostars

Actually, lossy compression of DNA sequence has intrigued me for a while. DNA sequencing already include noise of technical and biological ...

NRGC: a novel referential genome compression algorithm - OUCI

Motivation: Next-generation sequencing techniques produce millions to billions of short reads. The procedure is not only very cost effective but also can be ...

HADC: A Hybrid Compression Approach for DNA Sequences ...

... also succeeds in performing the compression at acceptable time; even saving more than 50% of the time taken by ERGC in most experiments.

A Survey on Gene Sequence Compression Algorithms Based on ...

[Results] The analysis covers the technologies utilized by existing reference-based gene compression algorithms, including those based on single nucleotide ...

A Reference-Free Lossless Compression Algorithm for DNA ... - MDPI

In this paper, we describe a new lossless compressor with improved compression capabilities for DNA sequences representing different domains and kingdoms.