- Docking Benchmark Group🔍
- Dockground scoring benchmarks for protein docking🔍
- Benchmarking the Ability of Common Docking Programs to Correctly ...🔍
- dptech|corp/Uni|Dock|Benchmarks🔍
- Docking Benchmark 5.5🔍
- ABAG|docking benchmark🔍
- A protein–DNA docking benchmark🔍
- A Membrane Protein Complex Docking Benchmark🔍
Docking Benchmark Group
Docking Benchmark Group - TDC - Therapeutics Data Commons
Instructions. This benchmark requires the use of TDC oracle class. For docking score, it requires PyScreener. You can find the detailed installation steps here.
Dockground scoring benchmarks for protein docking - PMC - NCBI
Each of these organisms are commonly used as a test system for their respective phylogenic group and as such is expected to be well ...
Benchmarking the Ability of Common Docking Programs to Correctly ...
The criteria were designed to account for both small and bulky ligands and to distinguish between binding poses where ligand groups are well ...
dptech-corp/Uni-Dock-Benchmarks - GitHub
Uni-Dock-Benchmarks contains a curated collection of datasets and benchmarking tests for evaluating the performance and accuracy of the Uni-Dock docking ...
Updates to the integrated protein-protein interaction benchmarks: Docking benchmark version 5 and affinity benchmark version 2. (Journal of Molecular ...
ABAG-docking benchmark - Oxford Academic
To compare the structural similarity of two proteins within the same sequence redundant group, we aligned the complex structures and calculated ...
A protein–DNA docking benchmark - PMC
The benchmark covers all major groups of DNA-binding proteins according to the classification of Luscombe et al., except for the zipper-type group. The variety ...
A Membrane Protein Complex Docking Benchmark - ScienceDirect
Every sub-graph groups the performance for all complexes that have been classified into the same difficulty category for one of the three docking stages. The Y ...
haddocking/BM5-clean: Docking benchmark 5 - GitHub
Updates to the integrated protein-protein interaction benchmarks: Docking benchmark version 5 and affinity benchmark version 2.
Docking Benchmark Version 5 and Affinity Benchmark Version 2
The JNK protein kinase is a member of the MAP kinase group that is activated in response to dual phosphorylation on threonine and tyrosine.
Benchmarking of different molecular docking methods for protein ...
We divide protein-peptide complexes into two groups based on the secondary structure of the peptides. The first group contains peptides ...
Updates to the Integrated Protein–Protein Interaction Benchmarks
Updates to the Integrated Protein–Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2 ... group home page. Company ...
Protein-protein docking benchmark 2.0: An update - ZLab
specific docking methods used. Table II provides a sum- mary analysis of the 3 groups in terms of the CAPRI evaluation parameters mentioned above. The ...
Name of the group providing it (and web link to the group) ... Dockground benchmark sets: Benchmarks, decoys, models and other knowledge resources for docking.
Docking Benchmark Set of Protein Models: Biophysical Journal
6 Å). The models were generated by a combination of homology modeling and Nudged Elastic Band method. A new, extended set of protein models was recently built ...
... group / NMR Research Group of Utrecht University with a main focus on the ... Docking benchmark 5 (BM5) - cleaned and ready to use for HADDOCK. Go to ...
Docking benchmark version 5 and affinity benchmark version 2 | Crick
The Francis Crick Institute Limited is a registered charity in England and Wales no. 1140062 and a company registered in England and Wales no.
A protein-DNA docking benchmark - preview & related info | Mendeley
The benchmark covers all major groups of DNA-binding proteins according to the classification of Luscombe et al., except for the zipper-type group. The ...
A protein-protein docking benchmark - Frederick National Lab for ...
AbstractWe have developed a nonredundant benchmark for testing protein–protein docking algorithms. Currently it contains 59 test cases: 22 enzyme‐inhibitor ...
A protein–protein docking benchmark - Wiley Online Library
We have developed a nonredundant benchmark for testing protein–protein docking algorithms. Currently it contains 59 test cases: 22 ...