Efficient reliability analysis of spatially resolved transcriptomics at ...

Through comprehensive evaluation over a collection of SRT datasets generated by different platforms at various resolutions, SpaSEG shows ...

Through comprehensive evaluation over a collection of SRT datasets generated by different platforms at various resolutions, SpaSEG shows superior reliability ...

Efficient reliability analysis of spatially resolved transcriptomics at ...

AbstractSpatially resolved transcriptomics (SRT) for characterizing cellular heterogeneities and activities requires systematic analysis approaches to ...

Efficient reliability analysis of spatially resolved transcriptomics at ...

Abstract Spatially resolved transcriptomics (SRT) for characterizing cellular heterogeneities and activities requires systematic analysis approaches to ...

Spatial Transcriptomics: Technical Aspects of Recent Developments ...

... effective resolution of 3D spatial ... Therefore, to improve the reliability of a spatial transcriptomics analysis, a power analysis framework has ...

Spatially resolved transcriptomic profiling of degraded and ... - Nature

Indeed, the upfront analysis of RNA quality can show considerable variability due to sample handling, storage, and/or intrinsic factors. We ...

Advances in spatial transcriptomics and related data analysis ...

... effectively leverage these technologies and ... spatial transcriptomics data to improve data resolution and interpretation reliability.

Spatially resolved single-cell genomics and transcriptomics ... - NCBI

... transcriptomics and 3D genome analysis with high spatial resolution. Another advantage of these methods is their high detection efficiency. For example ...

Spatially resolved transcriptomics: a comprehensive review of their ...

Nonetheless, the capturing efficiency of each barcoding bead is not satisfactory for utilizing the single-cell region as the minimum analysis unit, which needs ...

Mapping the transcriptome: Realizing the full potential of spatial data ...

Spatial transcriptomics thus combines tissue imaging and spatial resolution—effectively approaching the spatial resolution of ISH-based ...

y-bai/SpaSEG - GitHub

Efficient reliability analysis of spatially resolved transcriptomics at varying resolution using SpaSEG. SpaSEG, an unsupervised convolutional neural network ...

spatiAlign: an unsupervised contrastive learning model for data ...

AbstractBackground. Integrative analysis of spatially resolved transcriptomics datasets empowers a deeper understanding of complex ...

Spatially resolved transcriptomics provide a new method for cancer ...

... analysis reports' reliability. In addition, a plethora of web-based ... analysis of low expression RNA due to their high detection efficiency.

Spatially resolved transcriptomics: advances and applications

smFISH can not only visualize the transcripts in isolated cells or in situ tissues at a high resolution and with high hybridization efficiency, but also ...

PROST: quantitative identification of spatially variable genes and ...

Efficient reliability analysis of spatially resolved transcriptomics at varying resolutions using SpaSEG. http://biorxiv.org/lookup/doi ...

Recent advances in spatially resolved transcriptomics - BMB Reports

While the sequencing depth is high enough, the analysis is restricted to a limited number of regions. Another strategy to obtain spatially resolved ...

STOmicsDB: a comprehensive database for spatial transcriptomics ...

The analysis results include spatial position, gene expression matrices, high-resolution images for tissue section, cell annotation, etc. The ...

Spatially resolved transcriptomics: advances and applications

smFISH can not only visualize the transcripts in isolated cells or in situ tissues at a high resolution and with high hybridization efficiency, ...

12 publications - OUCI

Efficient reliability analysis of spatially resolved transcriptomics at varying resolutions using SpaSEG. Yong Bai, Xiangyu Guo, Keyin Liu, Bingjie Zheng, ...

Computational elucidation of spatial gene expression variation from ...

... efficiency of analysis ... ∙ Zhou, X. Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies.