Enhancing transcriptome expression quantification through accurate ...

TranSigner achieves higher accuracy in transcript abundance estimation and read assignment compared to existing tools.

TranSigner achieves accurate read assignments, obtaining higher accuracy in transcript abundance estimation compared to existing tools.

[PDF] Enhancing transcriptome expression quantification through ...

TranSigner is introduced, a versatile tool that assigns long reads to any input transcriptome, and achieves accurate read assignments, obtaining higher ...

bioRxiv on X: "Enhancing transcriptome expression quantification ...

Enhancing transcriptome expression quantification through accurate assignment of long RNA sequenc... Recently developed long-read RNA sequencing ...

Accurate long-read transcript discovery and quantification at single ...

Accurate detection and quantification of mRNA isoforms from nanopore long-read sequencing remains challenged by technical noise, ...

Accurate transcriptome-wide identification and quantification of ...

Many computational methods have been developed to characterize sample-specific APA using the corresponding RNA-seq data, but suffered from high error rate on ...

Enhancing transcriptome expression quantification through accurate ...

Article "Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner" Detailed information of ...

Oarfish: Enhanced probabilistic modeling leads to improved ...

Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner · Computer Science, Biology. bioRxiv.

Accurate expression quantification from nanopore direct RNA ...

Cellular fates and functions are underpinned by the expression of protein-coding and non-coding genes into RNA (termed the transcriptome). The expression ...

RSEM: accurate transcript quantification from RNA-Seq data with or ...

This issue is particularly important for quantification with de novo transcriptome assemblies in the absence of sequenced genomes, as it is difficult to ...

Systematic assessment of long-read RNA-seq methods for transcript ...

The study revealed that libraries with longer, more accurate sequences produce more accurate transcripts than those with increased read depth.

Improving nanopore read accuracy with the R2C2 method ... - PNAS

These reads can then be used to generate isoform-level transcriptomes for both genome annotation and differential expression analysis in bulk or single-cell ...

Fast and accurate approximate inference of transcript expression ...

We apply our algorithm to simulated and biological datasets, demonstrating a significant increase in speed with only very small loss in accuracy of expression ...

146 Transcriptome augmentation provides accurate and sensitive ...

Using purified cell types, we applied differential expression analysis to identify genes preferentially expressed in target cell types. Finally, we confirmed ...

Gene expression analysis | Profiling methods & how-tos - Illumina

Advanced technologies such as next-generation sequencing (NGS) have revolutionized the scale, speed, and accuracy of profiling gene expression levels in a ...

BaRTv1.0: an improved barley reference transcript dataset to ...

... accurate quantification of transcripts for expression analysis using RNA-seq. ... expression and AS analysis increasing our understanding ...

Whole-genome and transcriptome analysis enhances precision ...

RNA expression information was as valuable as DNA-based information for selecting treatments with clinical benefit. •. Integrated data inform ...

Enhancing transcriptome expression quantification through accurate ...

... in 60 seconds. Explore. Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner. Citation ...

Transcriptomics and solid tumors: The next frontier in precision ...

Finally, RNA sequencing and gene expression analysis have been incorporated into clinical trials to identify markers predicting response to immunotherapy. Many ...

(PDF) Characterization and Improvement of RNA-Seq Precision in ...

vast majority of read alignments (99.5%) has been assigned to these targets,. supporting a reliable measurement of their expression levels. Consequently,. most ...