Exploring Large Molecular Complexes with UCSF Chimera

thermophilus small subunit was crystallized alone and has the open form. Comparisons with other structures show that all 70S ribosomes have the closed form ( ...

Chimera Multi-Scale Modeling Extension

For exploring models of large molecular complexes. Example systems are viruses and chromosomes. Goal is to provide capabilities in Chimera ...

Multiscale Structural Visualization with UCSF Chimera

Sample Chimera Extension. Multiscale Modeling. • useful for exploring models of large molecular complexes. • combines volume visualization and atomic ...

Chimera Color Coding Chains that are Interacting - RBVI Mailing Lists

Hello, I am an undergraduate researcher still learning how to use Chimera. Our lab is exploring intramolecular bonds within a complex.

Software extensions to UCSF chimera for interactive visualization of ...

Many structures of large molecular assemblies such as virus capsids and ribosomes have been experimentally determined to atomic resolution.

UCSF Chimera - YouTube

Topic: Analyzing Molecular Assemblies with UCSF Chimera" Presenter: Tom Goddard, Programmer/Analyst, Resource for Biocomputing, ...

Software Extensions to UCSF Chimera for Interactive Visualization ...

Interactive visual exploration of large flexible multi-component molecular complexes. In Proceedings of IEEE Visualization, Oct. 10–15 (Austin, Texas), pp ...

Software Extensions to UCSF Chimera for Interactive Visualization ...

Existing molecular visualization programs work well for single protein and nucleic acid molecules and for small complexes. The methods presented here are ...

UCSF ChimeraX: Tools for structure building and analysis - Meng

Advances in computational tools for atomic model building are leading to accurate models of large molecular assemblies seen in electron ...

UCSF Chimera - I - Introduction

We will use UCSF Chimera (Pettersen et al. 2004) for molecular graphics visualization, but the software is capable of many complex operations.

Tutorial 3 – Advanced Selections - YouTube

... UCSF Chimera (https://www.cgl.ucsf.edu/chimera/), an extensible molecular modeling software ... Exploring PDB structures with UCSF Chimera.

Re: [chimerax-users] CastP surfaces in ChimeraX/ Chimera ...

... large complexes, but instead to explore the shape of individual proteins. However, if you cannot get the molecular surface calculated in Chimera, for a ...

Learn: Videos: Visualizing PDB Structures with UCSF Chimera

This tutorial series will enable viewers to become proficient in using UCSF Chimera (Version 1.17) 1 an extensible molecular modeling software.

Software Extensions to UCSF Chimera for Interactive Visualization ...

exploring this large set of interfaces would benefit from ... meric molecular complexes in computer memory, an tion, superimposing ...

Tutorial 1 – Getting Started with UCSF Chimera - YouTube

... UCSF Chimera (https://www.cgl.ucsf.edu/chimera/), an extensible molecular modeling software ... Exploring PDB structures with UCSF Chimera.

UCSF Chimera—A Visualization System for Exploratory Research ...

important for interactively exploring large complexes. Multiscale uses Chimera's core molecular display abilities, data structures, file reading, and ...

Molecular Docking Using Chimera and Autodock Vina Software for ...

In the field of drug discovery, many methods of molecular modeling have been employed to study complex biological and chemical systems.

Chimera - bio.tools

Software extensions to UCSF chimera for interactive visualization of large molecular assemblies ... molecules and for small complexes. The methods ...

UCSF ChimeraX - I - Overview

... explore some of the new features implemented for the display of large molecules and Cryo-EM data. 1.1 Learning objectives. Launching ChimeraX ...

UCSF Chimera, MODELLER, and IMP: An integrated modeling system

The bovine ARP2/3 complex structure has been determined by X-ray crystallography (Robinson et al., 2001), revealing its molecular organization. However, a ...