- Fig. 2. Estimates of haplotype phylogeny obtained from the 46...🔍
- Structural haplotypes and recent evolution of the human 17q21.31 ...🔍
- On the use of haplotype phylogeny to detect disease susceptibility loci🔍
- A phylogenetic approach for haplotype analysis of sequence data ...🔍
- Hierarchical Modelling of Haplotype Effects on a Phylogeny🔍
- Haplotype assignment of longitudinal viral deep sequencing data ...🔍
- Haplotype reconstruction using perfect phylogeny and sequence data🔍
- Estimating the relative proportions of SARS|CoV|2 haplotypes from ...🔍
Fig. 2. Estimates of haplotype phylogeny obtained from the 46...
Fig. 2. Estimates of haplotype phylogeny obtained from the 46...
triaria. Haplotypes are named as deWned in Table 1. (A) The maximum parsimony (MP) rooted cladogram is a strict consensus of 808 equally most parsimonious trees ...
Structural haplotypes and recent evolution of the human 17q21.31 ...
2). Applying a maximum-likelihood model to unphased copy number measurements we derived from 1000 Genomes sequence data (Fig. 1b–d), we inferred frequencies of ...
On the use of haplotype phylogeny to detect disease susceptibility loci
However, when two interacting sites are responsible for the disease, the cladistic analysis greatly improves the probability to find the two ...
A phylogenetic approach for haplotype analysis of sequence data ...
These estimates were used to normalize the target input DNA amounts of the single source samples (1–2 ng nuclear DNA and 500,000-2 million mtDNA copies) and to ...
Hierarchical Modelling of Haplotype Effects on a Phylogeny - Frontiers
... phylogeny shown in Figure 2 with n = 107 unique haplotypes. A script showing ... The posterior distribution of the conditional haplotype variance was obtained by ...
Haplotype assignment of longitudinal viral deep sequencing data ...
The two clades were also present in the maximum likelihood phylogenetic tree (Fig. ... haplotypes obtained with other methods (Supplementary Fig. S3) ...
Haplotype reconstruction using perfect phylogeny and sequence data
The haplotypes assigned to each individual need to be taken from the tree, and the objective is to optimize the likelihood of the reads. We will ...
Estimating the relative proportions of SARS-CoV-2 haplotypes from ...
Figure 7 Estimated maximum likelihood phylogenetic tree of 261 SARS-CoV-2 sequences, which includes 173 background sequences (green nodes) ...
The performance of phylogenetic algorithms in estimating haplotype ...
1). As a result, the different Fitch branch lengths derived from a given tree lead to alternative haplotype genealogies (Fig. 2).
Hierarchical modeling of haplotype effects based on a phylogeny
Although the HN model estimates the haplotype effects h, we can obtain ... phylogeny shown in Figure 2 with n = 107 unique haplotypes. We then ...
Two divergent haplotypes from a highly heterozygous lychee ...
... estimated completeness of 94.8% (also using BUSCO; Fig. 1c and ... The derived site frequency spectrum was obtained with ANGSD (v.
On the use of haplotype phylogeny to detect disease susceptibility loci
... obtain the most likely haplotypes by using the genetic information of the two parents. ... 2003, 4 (2): 171-178. 10.1517/phgs.4.2.171.22636 ...
Estimating the relative proportions of SARS-CoV-2 haplotypes from ...
Figure 7. Estimated maximum likelihood phylogenetic tree of 261 SARS-CoV-2 sequences, which includes 173 background sequences (green nodes) ...
Phylogeny and Haplotype Analysis of Fungi Within the Fusarium ...
There was no one discernible central haplotype from which most other haplotypes diverged (Fig. ... 2:184. Cummings, M. P., Neel, M. C., and Shaw, K. 2008. A ...
Application of Phylogenetic Networks in Evolutionary Studies
Phylogenetic trees constitute one type (see Fig. 2). A second type is the “split network,” which is obtained as a combinatorial generalization of phylogenetic ...
... haplotype 72 in the ... We made two estimations, one considering all the haplotypes in the box in Fig. 2 (Estimation A) and the other excluding haplotypes.
popart: full‐feature software for haplotype network construction - Leigh
Several methods for inferring haplotype networks have been described in the literature (Bandelt, Forster & Röhl 1999; Clement et al. 2002; ...
Sequence-based molecular phylogenetics and phylogeography of ...
Fig. 2. The cytochrome b phylogram, generated using PhyML 3.0 and BEAST v1.6.2, consisting of 253 sequences distributed into 103 haplotypes. As determined by ...
Interspecific phylogenetic analysis enhances intraspecific ...
2). The converse pattern was also observed as four S haplotype maternal plants from seed zones 522 and 731 produced seed containing N haplotype embryos (Fig. 2) ...
ACCURACY AT HIGHER LEVELS OF DIVERGENCE Phylogenies ...
the two haplotypes) (Templeton et al.,. 1992). The term j\k ... Figure 6 shows the distribution of the. Page 8. 1994. ACCURACY OF CLADOGRAM ESTIMATION. 229.