Foundation models for bioinformatics

Foundation models for bioinformatics - 2024 - Quantitative Biology

Textual foundation models, represented by large language models, can help with bioinformatics text mining, functioning as an AI reader or ...

Progress and opportunities of foundation models in bioinformatics

Finding gene network topologies for given biological function with recurrent neural network. Nat Commun 2021; 12:3125.

Foundation models build on ChatGPT tech to learn the fundamental ...

Most — but not all — current biological foundation models are built on an LLM framework, analogous to that of GPT-4. The pretraining process ...

(PDF) Foundation models for bioinformatics - ResearchGate

Applications of foundation models for bioinformatics.

Harnessing the deep learning power of foundation models in single ...

Foundation models typically apply a self-supervised pre-training strategy on many datasets with numerous parameters, necessitating considerable ...

Progress and opportunities of foundation models in bioinformatics

Bioinformatics has undergone a paradigm shift in artificial intelligence (AI), particularly through foundation models (FMs), which address ...

Progress and Opportunities of Foundation Models in Bioinformatics

The primary goal of this survey is to conduct a systematic investigation and summary of FMs in bioinformatics, tracing their evolution, current research status,

What are Foundation Models in Biology and Healthcare?

Foundation models are a category of AI models trained on massive amounts of unlabeled data, enabling them to handle a wide variety of tasks, ...

Foundation Models for Biology to Support Bioinformatics

We present here three new foundational models called scFoundation, scGPT and Geneformer, reported throughout the 12 months in the journals Nature and Nature ...

Biomedical Foundation Models - IBM Research

IBM Research biomedical foundation model (BMFM) technologies leverage multi-modal data of different types, including drug-like small molecules and proteins ( ...

14 Foundation Models for Biology Research and Chemistry

A list of companies building foundation models focused on DNA, RNA, proteins, as well as foundation models for small molecule drug discovery and organic ...

Context Matters for Foundation Models in Biology - Kempner Institute

We develop PINNACLE, a new geometric deep learning approach that generates context-aware protein representations to address these challenges.

apeterswu/Awesome-Bio-Foundation-Models - GitHub

The repository is a collection of awesome bio-foundation modeling papers, various domains include DNA, RNA, gene, protein, single-cell, and multimodalities.

Foundation models in molecular biology - Biophysics Reports

Foundation models in molecular biology 1. Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for ...

Foundation models in molecular biology - PubMed

Determining correlations between molecules at various levels is an important topic in molecular biology. Large language models have ...

General-purpose pre-trained large cellular models for single-cell ...

Single-cell foundation models output gene embeddings that convey biological meaning after pretraining. Gene embeddings are a vector for each ...

Multi-modal Transfer Learning between Biological Foundation Models

In this work we propose a multi-modal model that connects DNA, RNA, and proteins by leveraging information from different pre-trained modality-specific ...

MIT 6.S087: Foundation Models & Generative AI. BIOLOGY - YouTube

Guest lecture by Professor Manolis Kellis. 0:00 Welcome and Intro 1:17 Data Increases in Medicine 3:23 Paradigm Shifts: Data, Genomes, ...

Applications of foundation models for bioinformatics. Textual...

Download scientific diagram | Applications of foundation models for bioinformatics. Textual foundation models, represented by large language models, ...

Primer: Large Language Models and Biological Foundation Models

In the primer part of the seminar, we will explore Large Language Models (LLMs) and biological foundation models, covering their architecture, training, ...