- Insights into Protein–DNA Interactions through Structure Network ...🔍
- Insights into protein|DNA interactions through structure ...🔍
- Insights into Protein–DNA Interactions through Structure ...🔍
- Insights into protein–DNA interactions from hydrogen bond energy ...🔍
- Insights into the NF|κB|DNA Interaction through NMR Spectroscopy🔍
- Insights into protein|DNA interactions through structure network ...🔍
- Geometric deep learning of protein–DNA binding specificity🔍
- Structural predictions of protein–DNA binding🔍
Insights into Protein–DNA Interactions through Structure Network ...
Insights into Protein–DNA Interactions through Structure Network ...
The interaction between the amino acids and the nucleotides at the protein–DNA interface is represented as undirected bipartite Protein–DNA ...
Insights into protein-DNA interactions through structure ... - PubMed
Protein-DNA interactions are crucial for many cellular processes. Now with the increased availability of structures of protein-DNA complexes ...
Insights into Protein–DNA Interactions through Structure ... - PLOS
In the bipartite graph representation of the protein–DNA complex, the amino acids and the nucleotides of the DNA form the two node sets.
Insights into Protein–DNA Interactions through Structure Network ...
PDF | Protein-DNA interactions are crucial for many cellular processes. Now with the increased availability of structures of protein-DNA complexes,.
Insights into Protein–DNA Interactions through Structure Network ...
Protein–DNA interactions are crucial for many cellular processes. Now with the increased availability of structures of protein–DNA complexes, gaining deeper ...
Insights into protein–DNA interactions from hydrogen bond energy ...
studied different types of HBs at the interface of 28 X-ray crystal structures of protein–DNA complexes. The HBs were classified according to ...
PDNAPred: Interpretable prediction of protein-DNA binding sites ...
Current computational methods for protein-DNA binding site prediction can be categorized into two types: sequence-based methods and structure- ...
Insights into Protein–DNA Interactions through Structure Network ...
NM Luscombe, Protein–DNA interactions: amino acid conservation and the effects of mutations on binding specificity., J Mol Biol, № 320, с. 991
Insights into the NF-κB-DNA Interaction through NMR Spectroscopy
The observation implies that this stretch of the protein remains highly flexible in the DNA-bound form of the protein. The resonances from the ...
Insights into protein-DNA interactions through structure network ...
Protein-DNA interactions are crucial for many cellular processes. Now with the increased availability of structures of protein-DNA complexes, gaining deeper ...
Geometric deep learning of protein–DNA binding specificity - Nature
Structural changes in the context of binding, along with large mechanistic diversity, contribute to the difficulty. Protein–DNA structures ...
Structural predictions of protein–DNA binding: MELD-DNA
For this structure, we find a significant amount of binding through the minor groove in most sequences; however, for Random1 sequence, the most ...
Insights into DNA solvation found in protein-DNA structures
Here we show how the cumulative buildup of amino acid atoms around the sugars, phosphates, and bases in different protein-DNA complexes produces a binding ...
DNAproDB: an interactive tool for structural analysis of DNA–protein ...
Through the structural analysis of proteins bound to DNA binding sites, researchers gain insight into the physical mechanisms that underlie ...
Protein-DNA Interaction Analysis - Creative Proteomics
In the realm of molecular biology, unraveling the interactions between proteins and DNA stands as a pivotal step in deciphering cellular activities and gene ...
Oligomeric protein structure networks - BMC Bioinformatics
In this study, oligomeric protein structures are viewed from a network perspective to obtain new insights into protein association.
Surveying the Side-Chain Network Approach to Protein Structure ...
Network theory-based approaches provide valuable insights into the variations in global structural connectivity between different dynamical states of ...
Unique insight into protein-DNA interactions from single molecule ...
Furthermore, the transient character of protein interactions with nonspecific DNA sites, for example during their target site search renders these complexes ...
PDA: an automatic and comprehensive analysis program for protein ...
Knowledge of protein-DNA interactions at the structural-level can provide insights into the mechanisms of protein-DNA recognition and gene ...
Insights into Protein–DNA Interactions through Structure Network ...
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