Integrative analysis in Seurat v5

Integrative analysis in Seurat v5 - Satija Lab

In Seurat v5, we introduce more flexible and streamlined infrastructure to run different integration algorithms with a single line of code.

Introduction to scRNA-seq integration Seurat - Satija Lab

The Seurat v5 integration procedure aims to return a single dimensional reduction that captures the shared sources of variance across multiple ...

questions about intergrated analysis in Seurat v5 #7754 - GitHub

Hi, Thanks for your great tools! I know that integrated data is stored in dimensional reduction in Seurat v5, such as obj$integrated.cca.

scRNA-seq -Integrated analysis: Introduction, preprocessing and ...

scRNA-seq -Integrated analysis: Introduction, preprocessing and combining samples (Seurat v5) 124 views 3 months ago

satijalab/seurat: vignettes/seurat5_integration.Rmd - rdrr.io

Seurat v5 enables streamlined integrative analysis using the IntegrateLayers function. The method currently supports five integration methods.

Seurat V5 Video Tutorial 4 : Data Integration in Seurat v5 - YouTube

12:11 Go to channel scRNA-seq Data Analysis in Seurat V5: Analysing Just One Sequencing Dataset Single Cell Genomics, Transcriptomics & Proteomics

Seurat v5 integration -- question on "SCT" vs "integrated" assay

What is the correct way to proceed downstream in terms of analysis is representative plots for those markers that are not found in “integrated” ...

Changes in Seurat v5 - Satija Lab

Seurat v5 introduces a streamlined integration and data transfer workflows that performs integration in low-dimensional space, and improves speed and memory ...

Integrative, multimodal, and scalable analysis with Seurat v5 - Science

Search · Learn about the flexible and scalable infrastructure that enables the routine analysis of millions of cells on a laptop computer · Hear about the ...

Seurat v5 Command Cheat Sheet - Satija Lab

Seurat v5 Command Cheat Sheet; Data Integration; Introduction to scRNA-seq integration · Integrative analysis in Seurat v5 · Mapping and ...

Getting Started with Seurat - Satija Lab

Integrative analysis in Seurat v5 · Mapping and annotating query datasets ... The vignettes below demonstrate three scalable analyses in Seurat v5: Unsupervised ...

Introduction to scRNA-Seq with R (Seurat) - Bioinformatics

Seurat v5 introduced the following new features: Integrative multi-modal analysis with bridge integration; 'Sketch'-based analysis of large data sets; methods ...

Tools for Single Cell Genomics • Seurat - Satija Lab

Seurat v5 · Integrative multimodal analysis: · Flexible, interactive, and highly scalable analsyis: · Analysis of sequencing and imaging-based spatial datasets: ...

JoinLayers to find markers in merged or integrated analysis in seurat

JoinLayers is new in v5, and it is "discussed" in the integration vignettes. ...Once integrative analysis is complete, you can rejoin the ...

scRNA-seq Data Integration in Seurat V5 - YouTube

In this tutorial, we dive into data integration using Seurat V5. Learn how to seamlessly integrate multiple samples in your single-cell RNA ...

Seurat v5 and how to correctly integrate across multiple experiments

... Seurat objetct. With v5, the concept of layers has been introduced. When I read the vignette for integrative analysis in Seurat the example ...

Sketch integration using a 1 million cell dataset from Parse ...

Next we perform integrative analysis on the 'atoms' from each of the datasets. Here, we perform integration using the streamlined Seurat v5 ...

Seurat v5, cross-modality mapping and large-scale clustering of ...

Mapping single-cell sequencing profiles to comprehensive reference datasets provides a powerful alternative to unsupervised analysis. However, most ...

Introduction to single cell analysis with Seurat V5 - SDDRC

analysis with Seurat V5. Sara Brin Rosenthal, Ph.D. Associate Director for ... Integrative. Multi-Omics. Microbiome. Whole Genome. & Exome. Epigenomics ...

However, in Integrative analysis in Seurat v5 JoinLayers is only called on the end of the sequence: IntegrateLayers , FindNeighbors ...