Mapping and annotating query datasets

Mapping and annotating query datasets - Satija Lab

This reference can be used to analyze additional query datasets through tasks like cell type label transfer and projecting query cells onto reference UMAPs.

Mapping and annotating query datasets • Seurat - Satija Lab

This reference can be used to analyze additional query datasets through tasks like cell type label transfer and projecting query cells onto reference UMAPs.

Single Cell Data Integration: Mapping and Annotating Query Datasets

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"Mapping and Annotating Query Dataset" Vignettes = automatic cell ...

I have went through the "Mapping and Annotating Query Dataset" Vignettes, and am wondering whether what "Mapping and Annotating Query ...

Mapping single-cell data to reference atlases by transfer learning

We then investigated the transfer of cell type labels from the reference dataset. Each cell in the query TM was annotated using its closest ...

Fail to replicate results in "Mapping and annotating query datasets"

I am using the code from the page https://satijalab.org/seurat/articles/integration_mapping to learn Seurat. However, when I am using the ...

Azimuth annotation

... mapping can rapdidly, robustly, and sensitively annotate and interpret query datasets. ... query ATAC data to that of the multiome. Thus ...

Azimuth

Azimuth is a web application that uses an annotated reference dataset to automate the processing, analysis, and interpretation of a new single-cell RNA-seq ...

scRNA-seq dataset comparison - Biostars

Mapping and annotating query datasets. NOTE: This response is purely based on logic and I did not try this anywhere in my projects. Regards ...

Single-cell reference mapping to construct and extend cell-type ...

... mapping' methods) to address these challenges (4,12,13). Such methods could for instance be used to map a query dataset to the reference and annotate the cells.

Efficient and precise single-cell reference atlas mapping with ...

In addition, it must be able to scale to large datasets, map with high accuracy, and enable inference of diverse query cell annotations based on reference cells ...

11. Annotation - Single-cell best practices

When mapping completely fails, you will often see a full separation of query and reference in the UMAP. Now let's look at the cell type annotations from the ...

Dictionary learning for integrative, multimodal and scalable single ...

... Mapping and Annotating Query Datasets'). The same functionality has ... We then repeated bridge integration with the resampled dataset, mapping ...

The future of rapid and automated single-cell data analysis using ...

... mapping and annotation. The widespread use of ... 62 Creating a new reference dataset to enable mapping query datasets from each new ...

Automated Annotation of Single Cell Data (EXPERIMENTAL)

a projection of the query dataset into the reference embedding, and a newly computed UMAP based on that projection. After you complete the automatic annotation ...

The future of rapid and automated single-cell data analysis using ...

Label transfer: projecting labels from a well-annotated reference atlas onto a newly generated query dataset. Reference mapping for genome ...

Web Resources for Cell Type Annotation - 10x Genomics

... annotated reference datasets. Databases with marker genes for manual annotation. PanglaoDB. PanglaoDB is a database with single-cell datasets and lists of ...

Mapping single-cell data to reference atlases by transfer learning

This knowledge transfer can be transformative for analyzing new query datasets by transferring discrete cell type labels that facilitate annotation of query ...

satijalab/seurat: vignettes/seurat5_multimodal_reference_mapping ...

Intro: Seurat v4 Reference Mapping. This vignette introduces the process of mapping query datasets to annotated references in Seurat. In this example, we map ...

scDOT: enhancing single-cell RNA-Seq data annotation and ...

... mapping between cells in the query data and reference-defined cell types. Secondly, scDOT develops an interpretable scoring system based on ...