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Most partial domains in proteins are alignment and annotation artifacts


Most partial domains in proteins are alignment and annotation artifacts

Protein domains are commonly used to assess the functional roles and evolutionary relationships of proteins and protein families.

Most partial domains in proteins are alignment and annotation artifacts

Partial domains are largely the result of alignment and annotation artifacts and should be viewed with caution. The presence of partial ...

Most partial domains in proteins are alignment and annotation artifacts

The presence of partial domain annotations in proteins should raise the concern that the prediction of the protein's gene may be incomplete. In ...

Most partial domains in proteins are alignment and annotation artifacts

Mentioning: 30 - BackgroundProtein domains are commonly used to assess the functional roles and evolutionary relationships of proteins and protein families.

Partial protein domains: evolutionary insights and bioinformatics ...

In many other cases, there is strong evidence that this partial alignment is the result of errors in the identification of the protein sequence ...

Most partial domains in proteins are alignment and annotation artifacts

Russell DW, Schneider WJ, Yamamoto T, Luskey L, Brown MS, Goldstein JL. Domain map of the LDL receptor: sequence homology with the epidermal growth factor ...

Most protein domains exist as variants with distinct functions across ...

Accordingly, domain isotypes, compared to each other, modulate or abolish the functionality of protein domains. These results challenge the current view of ...

Fritz Sedlazeck on X: "RT @JasonWilliamsNY: Most partial domains ...

RT @JasonWilliamsNY: Most partial domains in proteins are alignment and annotation artifacts https://t.co/qVZKYTe9d3 #genomebiology.

Example of Pfam and CDD coverage of a protein sequence. A ...

Partial domains are largely the result of alignment and annotation artifacts and should be viewed with caution. The presence of partial domain annotations in ...

Most protein domains exist as variants with distinct functions across ...

For most protein domains (58.3%), the length of the domains ... (2015) Most partial domains in proteins are alignment and annotation artifacts.

Most partial domains in proteins are alignment and annotation ...

Most partial domains in proteins are alignment and annotation artifacts.在哪里下载?这篇文献在哪里可以阅读?BACKGROUND:Protein domains are commonly used to ...

Improving pairwise comparison of protein sequences with domain ...

Because they provide strong clues regarding protein functions, domains occupy a key position among the relevant annotations that can be assigned ...

Jason "boundless delight " Williams on X: "Most partial domains in ...

Most partial domains in proteins are alignment and annotation artifacts https://t.co/qVZKYTe9d3 #genomebiology.

Exhaustive Enumeration of Protein Domain Families - ScienceDirect

We use alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model. In all, ...

Structural domains of phytochrome deduced from homologies in ...

Most partial domains in proteins are alignment and annotation artifacts. Article Open access 15 May 2015. Databases and Protein Structures.

Protein Sequence Domain Annotation using Language Models

While most predicted domain boundaries closely match the database ... Protein remote homology detection and structural alignment using deep ...

Domain deletions and substitutions in the modular protein evolution

tionary events (physical domain deletion, substitution and shadow domains) and two types of annotation artefacts (camouflage and erosion). In the case of.

Exhaustive Enumeration of Protein Domain Families

Aligning adjacent domains in two protein sequences results in a single alignment. In this case, one alignment represents the recurrence of more than one domain.

Improvement in Protein Domain Identification Is Reached by ... - PLOS

Traditional protein annotation methods describe known domains with probabilistic models representing consensus among homologous domain sequences.

Is there a tool for plotting protein structures and domains? - Biostars

What is shown in that paper most likely can be done in MS Word, or any other editor that can show boxes around text.