Nextstrain / ncov / gisaid / global / 6m

avian-flu/h5n1-cattle-outbreak/genome · avian-flu/h5n1-cattle-outbreak/ha · avian-flu/h5n1-cattle-outbreak/mp · avian-flu/h5n1-cattle-outbreak/na · avian-flu/ ...

Nextstrain / ncov / gisaid / reference

global/6m · global/all-time. Africa, africa/1m · africa/2m · africa/6m · africa/all ... We gratefully acknowledge the authors, originating and submitting ...

GISAID - gisaid.org

As one of the key players in ensuring effective data sharing GISAID has made a significant contribution to global health security.

Emerging & Evolving Respiratory Viruses: Test Design Matters

SARS-CoV-2 Status—U.S. Accessed May 2024. https://nextstrain.org/ncov/gisaid/global/6m. 3. WHO. Respiratory Virus Status—Europe 2023/4 Season.

SARS-CoV-2 Genomic Epidemiology Dashboards: A Review ... - MDPI

Genomic Epidemiology of SARS-CoV-2 with Subsampling Focused Globally over the Past 6 Months. Available online: https://nextstrain.org/ncov/gisaid/global/6m ( ...

ncov/docs/src/reference/change_log.md at master - GitHub

After this update, URL structure (ie https://nextstrain.org/ncov/gisaid/global/6m) is unchanged. PR 1074. v13 (16 May 2023). 16 May 2023: Update workflow to ...

Virus Genetics - Khon Kaen Smart City

Details: Couldn't load JSONs for ncov/gisaid/global/6m . Please contact us if you think this is a bug. Nextstrain core datasets & narratives. Available ...

Genomic Epidemiology of SARS-CoV-2 with Subsampling Focused ...

Genomic Epidemiology of SARS-CoV-2 with Subsampling Focused Globally over the Past 6 Months. https://nextstrain.org/ncov/gisaid/global/6m. has been cited by ...

The most exposed regions of SARS-CoV-2 structural proteins are ...

... nextstrain.org/ncov/gisaid/global/6m). The primary Y-axis represents the Ka/Ks ratio, and the secondary Y-axis represents the percentage of ...

Genomic surveillance of emerging SARS-CoV-2 Omicron variations ...

... nextstrain.org/ncov/gisaid/global/6m) based on GISAID data between December 2021 and November 2022. Abbreviations: GISAID, the Global ...

Circulating strains of SARS-CoV-2 are fast-changing. a Genetic...

... CoV-2 spike glycoproteins from GISAID collected between December 2019 and October 2022 (https://nextstrain.org/ncov/gisaid/global/6m?l=unrooted&m=div). The ...

SARS-CoV-2 population dynamics in immunocompetent individuals ...

... nextstrain.org/ncov/gisaid/global/6m?l=clock). However, sequencing analysis has shown that some variants show higher divergence from ...

ncov/nextstrain_profiles/nextstrain-gisaid/builds.yaml at master

title: Genomic epidemiology of SARS-CoV-2 with subsampling focused globally over the past 2 months ... # Custom subsampling logic for global region over 6m. # ...

Estimation of SARS-CoV-2 fitness gains from genomic ... - PNAS

Nextstrain/NCOV/GISAID/GLOBAL/6M (2023). https://nextstrain.org/ncov/gisaid/global/6m. Accessed 19 July 2023. Google Scholar. 8. A. O'Toole et al., Assignment ...

Using phylogenetics to track disease outbreaks - Your Genome

... virus behind the covid-19 pandemic that spread across the world in 2019-20. Image credit: Nextstrain (https://nextstrain.org/ncov/gisaid/global/6m), November ...

Fine-scale spatial and social patterns of SARS-CoV-2 transmission ...

Genomic epidemiology of SARS-CoV-2 with subsampling focused globally over the past 6 months. https://nextstrain.org/ncov/gisaid/global/6m?l=clock. Accessed ...

Estimation of SARS-CoV-2 fitness gains from genomic surveillance ...

References. [1].↵. Nextstrain / ncov / gisaid / global / 6m, 2023. https://nextstrain.org/ncov/gisaid/global/6m. Google Scholar. [2].↵. WHO ...

AIVE: accurate predictions of SARS-CoV-2 infectivity from ... - eLife

Genomic databases, such as Nextstrain and the Global Initiative ... ncov/gisaid/global/6m; 21 December 2023). APESS values of them also ...

Virological characteristics of the SARS-CoV-2 BA.2.86 variant

1), are predominantly circulating worldwide according to Nextstrain (https://nextstrain.org/ncov/gisaid/global/6m ). However, a lineage far distinct from ...

Efficacy of the tetravalent protein COVID-19 vaccine, SCTV01E

Genomic epidemiology of SARS-CoV-2 with subsampling focused globally since pandemic start. https://nextstrain.org/ncov/gisaid/global/6m (2023).