Null|free False Discovery Rate Control Using Decoy Permutations

Null-free False Discovery Rate Control Using Decoy Permutations

Competitive decoy tests are constructed from permutations of original samples and are used to estimate the false target discoveries. We prove ...

Null-free False Discovery Rate Control Using Decoy Permutations

We propose a null distribution-free approach to FDR control for multiple hypothesis testing. This approach, named target-decoy procedure, simply builds on the ...

Null-free False Discovery Rate Control Using Decoy Permutations

The traditional approaches to false discovery rate (FDR) control in multiple hypothesis testing are usually based on the null distribution of a test ...

Null-free False Discovery Rate Control Using Decoy Permutations

Here, we propose a null distribution- free approach to FDR control for multiple hypothesis testing in the case-control study. This approach, named target-decoy ...

Null-free False Discovery Rate Control Using Decoy Permutations

Here, we propose a null distribution- free approach to FDR control for multiple hypothesis testing in the case-control study. This approach, named target-decoy ...

Null-free False Discovery Rate Control Using Decoy Permutations

Here, we propose a null distribution-free approach to FDR control for multiple hypothesis testing in the case-control study. This approach, named target-decoy ...

Null-free False Discovery Rate Control Using Decoy Permutations

Here, we propose a null distribution-free approach to FDR control for multiple hypothesis testing in the case-control study. This approach, ...

Null-free False Discovery Rate Control Using Decoy Permutations

Null-free False Discovery Rate Control Using Decoy Permutations. Kun He, Mengjie Li, Yan Fu, Fuzhou Gong, Xiaoming Sun. 2022, Acta ...

New CDC and FDA Study Findings Have Been Reported from ...

New CDC and FDA Study Findings Have Been Reported from Chinese Academy of Sciences (Null-free False Discovery Rate Control Using Decoy Permutations)-

A direct approach to false discovery rates by decoy permutations

The target-decoy procedure simply builds on the ordering of hypotheses by some statistic, and directly estimates the false target ...

Clipper: p-value-free FDR control on high-throughput data from two ...

The most widely used criterion to ensure the analysis reliability is the false discovery rate (FDR), which is primarily controlled based on p- ...

Decoy-free protein-level false discovery rate estimation

Motivation: Statistical validation of protein identifications is an important issue in shotgun proteomics. The false discovery rate (FDR) is a powerful ...

Challenging targets or describing mismatches? A comment on ...

... Decoy Search Strategy for False Discovery Rate Control in. Proteomics. ... Null-Free False Discovery Rate Control Using Decoy. Permutations.

A note on using permutation-based false discovery rate estimates to ...

Permutation methods have become popular to estimate FDR in genomic studies. The purpose of this paper is 2-fold. First, we investigate theoretically and ...

Target-decoy false discovery rate estimation using Crema - bioRxiv

This +1 correction is analogous to +1 corrections in permutation testing, and it is required in order to achieve valid FDR control under the ...

Beyond Target–Decoy Competition: Stable Validation of Peptide ...

In bottom-up discovery proteomics, target–decoy competition (TDC) is the most popular method for false discovery rate (FDR) control.

Null-free False Discovery Rate Control Using Decoy Permutations

Kun HE, Meng-jie LI, Yan FU, Fu-zhou GONG, Xiao-ming SUN. Null-free False Discovery Rate Control Using Decoy Permutations. Kun HE, Meng-jie LI, Yan FU, ...

Multiple Competition-Based FDR Control and Its Application to ...

framework for competition-based FDR control using multiple null scores. ... rates by decoy permutations (2018). arXiv preprint arXiv:1804.08222. 15 ...

How do FDR procedures estimate a False Discovery Rate without a ...

I think that's a really good question; too many people use the Benjamini-Hochberg procedure (abbreviated BH; possibly the most popular ...

Bias in False Discovery Rate Estimation in Mass-Spectrometry ...

Accurate target-decoy-based false discovery rate (FDR) control of peptide identification from tandem mass-spectrometry data relies on an ...