Planning bioinformatics workflows using an expert system

In a typical interaction with the system, the user begins by browsing through the knowledge base to identify the desired output data type. Then, they ask BETSY ...

Planning bioinformatics workflows using an expert system - PubMed

An expert system approach can facilitate exploratory bioinformatic analysis by automating the development of workflows, a task that requires significant domain ...

(Open Access) Planning bioinformatics workflows using an expert ...

TL;DR: The Bioinformatics ExperT SYstem is a backwards‐chaining rule‐based expert system comprised of a data model that can capture the richness of ...

Planning bioinformatics workflows using an expert system - OUCI

Abstract Motivation Bioinformatic analyses are becoming formidably more complex due to the increasing number of steps required to process the data, ...

Planning bioinformatics workflows using an expert system - TDT01

Planning bioinformatics workflows using an expert system. Bioinformatics (Oxford, England), 2017-04, Vol.33 (8), p.1210-1215 [Peer Reviewed Journal]. The ...

Bioinformatics Basics: Data Acquisition and Data Wrangling

Chen X, Chang JT. Planning bioinformatics workflows using an expert system. Bioinformatics. 2017, 33(8). Endel F, Piringer H. Data Wrangling: Making data useful ...

Benefits of workflow management systems in bioinformatics ... - Reddit

A WMS contains workflows that are programmed by an expert bioinformatician. A workflow links together source data, QC scripts, software ...

Design and Development of a Knowledge-Based Expert System for ...

The most used and famous WFMS for bioinformatics is Taverna (27), an ap- plication tool that has been created by the myGrid team and funded through the. OMII-UK ...

Fulfilling the need for bioinformatics in biomedical research

Planning bioinformatics workflows using an expert system. Article. Jan 2017; BIOINFORMATICS. Xiaoling Chen · Jeffrey T Chang.

Volume 33 Issue 8 | Bioinformatics - Oxford Academic

Planning bioinformatics workflows using an expert system. Xiaoling Chen and Jeffrey T Chang. Bioinformatics, Volume 33, Issue 8, April 2017, Pages 1210–1215 ...

A Literature Review of Bioinformatic Workflow Management Tools ...

Planning bioinformatics workflows using an expert system. Bioinformatics 33, 8 (2017), 1210–1215. [3] Martín Garrido-Rodriguez, Daniel Lopez-Lopez ...

Cloud-based bioinformatics workflow platform for large-scale next ...

This paper proposes a Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses, which enables reliable and highly ...

Portable, reproducible and scalable bioinformatics workflows using ...

... systems. While Nextflow supports portability and can run on many computing infrastructures, we describe why we specifically love using Nimbus ...

Developing and reusing bioinformatics data analysis pipelines using ...

We then highlight the benefits of using scientific workflow systems to get modular, reproducible and reusable bioinformatics data analysis pipelines. We finally ...

Closha: bioinformatics workflow system for the analysis of massive ...

To address this challenge, we developed a cloud-based workflow management system, Closha, to provide fast and cost-effective analysis of massive ...

Bioinformatics workflows for routine analysis of many samples

Discover an easy way to get reproducible analyses, traceability of results and efficient bulk analysis with QIGEN CLC workflows.

Bioinformatics scientific workflows: combining databases, AI ... - LIS

output contains several workflows (the plans) with equivalent or similar functionalities. ... An HTN Planning System. Journal of Artificial Intelligence ...

Bioinformatics workflows for clinical applications in precision oncology

If the setup of a bioinformatics workflow for sequencing data is still in the planning phase, using the newer GRCh38 build is advised [35], as use of the ...

NGS Workflow Steps | Illumina sequencing workflow

Next-generation sequencing workflows start with nucleic acid isolation, followed by library preparation. Libraries are sequenced on Illumina sequencing systems.

A Data-Intelligence-Intensive Bioinformatics Copilot System for ...

... plan better workflows and select optimal tools for bioinformatics research. ... Researchers interacted with the Coscientist system to ...