Read counts from environmental DNA

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

The sampling of environmental DNA (eDNA) coupled with cost-efficient and ever-advancing sequencing technology is propelling changes in ...

Environmental DNA metabarcoding read numbers and their ...

We demonstrate the capacity of NovaSeq metabarcoding to reveal community structure, reliably detect rare species and identify unique ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds · Abstract · Footnotes · Subject Area.

Quantitative environmental DNA metabarcoding shows high ...

The coefficients of the linear regressions varied from 174.1 (IN st. 4) to 900.8 (IN cooler blank) (Table S4), suggesting that sequence reads ...

Environmental DNA metabarcoding read numbers and their ...

Metabarcoding of environmental DNA (eDNA) provides more comprehensive, efficient, and non-invasive sampling of biological communities than ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Here we tested whether read counts from eDNA metabarcoding provide accurate quantitative estimates of the absolute abundance of fish in holding ponds with known ...

The true picture of environmental DNA, a case study in harvested ...

Average read counts and site occupancy positively correlated strongly with species abundance and biomass, with the exception of samples affected by PCR ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds ... Contributors: Cristina Di Muri.

Correlations between eDNA metabarcoding read counts and fish...

Download scientific diagram | Correlations between eDNA metabarcoding read counts and fish abundance/biomass. Scatterplots showing lines of best fit and ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds. Cristina Di Muri1, Lori Lawson ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Dive into the research topics of 'Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds'.

Sampling environmental DNA from trees and soil to detect cryptic ...

For roller samples, the mean number of reads per sample averaged 4849 ± 2094 (SE) across species for arboreal mammals (range = 56–14,699, n = 8) ...

Extracting abundance information from DNA‐based data - PMC - NCBI

Quantifying microbial communities with 454 pyrosequencing: Does read abundance count ... Quantitative monitoring of multispecies fish environmental DNA using high ...

Read counts from environmental DNA (eDNA) metabarcoding reflect ...

Most common species were detected using eDNA, but rare species were often missed out under these high stocking densities. Average read counts and site occupancy ...

Environmental DNA metabarcoding reveals spatial and seasonal ...

HiSeq and MiSeq sequencing (Illumina) produced, respectively, approximately 240 x 106 and 12 x 106 raw reads, with demultiplexing resulting in ...

Environmental DNA Sequencing | Biomonitoring using eDNA

Environmental DNA (eDNA) sequencing is a rapidly emerging method for studying biodiversity and monitoring ecosystem changes.

Environmental DNA reveals the genetic diversity and population ...

Due to low read counts in eDNA samples, we resequenced the eDNA library in two additional MiSeq runs (53). Multiplex PCR amplification of ...

Predicting trawl catches using environmental DNA - Oxford Academic

et al. Read counts from environmental DNA (eDNA) metabarcoding reflect fish abundance and biomass in drained ponds . Metabarcod Metagenom.

Report Measuring biodiversity from DNA in the air - ScienceDirect.com

Cell values represent total read counts from pooled COI, 16S, and nested 16S amplifications. ... n values represent total number of pooled ...

Environmental DNA metabarcoding as a tool for biodiversity ...

Any putative fish detection that occurred in only a single sample was sub- jected to two additional read count thresholds based on the number of ...