Sequence Features File
Sequence Features File - Jalview
A features file is a simple ASCII text file, where each line contains tab separated text fields. No comments are allowed.
A sequence feature (Seq-feat) is a block of structured data (SeqFeatData) explicitly attached to a region of a Bioseq through one or two Seq-locs.
Since Jalview 2.08, sequence features are global to a set of sequences appearing (independently or together) in many different alignments. Practically, this ...
Bio.SeqFeature module — Biopython 1.76 documentation
Represent a Sequence Feature holding info about a part of a sequence. This is heavily modeled after the Biocorba SeqFeature objects.
Sequence File Formats | ComputationalGenomicsManual
The first line for each sequence begins with an @ sign and has the sequence ID, up to the first white space, and as with fasta files, after the space can have ...
The DDBJ/ENA/GenBank Feature Table Definition
* Feature keys allow specific annotation of important sequence features. ... Definition structure and distribution of repeated sequence. Value format
5.2. Introduction to Sequence Formats
A sequence format defines the permitted layout and content of text in a file. This includes text tokens that define fields used in a databank.
Sequence annotation (Features) | UniProt help
Sequence annotations describe regions or sites of interest in the protein sequence, such as post-translational modifications, binding sites, enzyme active ...
Insert a Feature into a Sequence - SnapGene Support
How do I insert a feature into a sequence? Open a DNA Sequence File and Define the Insertion Point ...
Files and File Types | UC Davis Bioinformatics Core March 2019 ...
Describes feature (ex. gene) locations within a sequence file (ex. genome). The GFF (General Feature Format) format consists of one line per feature, each ...
When feature tables are held together with the sequence they refer to, then the format is identical to the sequence format of the same name as the feature ...
Displaying sequence features in Jalview - YouTube
... file formats including FASTA, PFAM, MSF, Clustal, BLC, PIR, Stockholm. Jalview collaborates with several groups to offer a broad range of ...
GenBank Feature Extractor - Bioinformatics.org
The program extracts or highlights the relevant sequence segments and returns each sequence feature in FASTA format. GenBank Feature Extractor is particularly ...
What is the most suitable file format for storing sequence alignments ...
For a single reference sequence, you can have infinite annotation types. The reads are just another layer. If each layer is a separate file, you ...
Submission of annotation using a 5-column tab-delimited feature table
The sequence identifier (SeqId) must be the same as that used on the sequence. The table_name is optional. Subsequent lines of the table list ...
Import and Export Sequence Data - Geneious
Supported Format Types ; Qual. *.qual. Quality file. Associated with a FASTA file ; Raw sequence text. *.seq. Sequences. Any file that contains only a sequence ; Rich ...
The sequence file is a text file in FASTA-like format contains all nucleotide sequences. In the sequence file, one array data consists of a line of header lines ...
General feature format - Wikipedia
In bioinformatics, the general feature format is a file format used for describing genes and other features of DNA, RNA and protein sequences.
Bioinformatic File Format & Their Use Cases - Form Bio
A GFF (general feature format; file extension .gff2 or .gff3) describes the various sequence elements that make up a gene and is a standard way ...
File Formats Tutorial | Computational Biology Core
Fasta format is a simple way of representing nucleotide or amino acid sequences of nucleic acids and proteins. This is a very basic format with two minimum ...