Sequence and structural conservation reveal fingerprint residues in ...

Joint sequence, structure, and phylogenetic analyses identify highly conserved features in transmembrane domains of transient receptor ...

Transient receptor potential (TRP) proteins are a large family of cation-selective channels, surpassed in variety only by voltage-gated ...

Sequence and structural conservation reveal fingerprint residues in ...

Aiming to unveil distinctive structural features common to the transmembrane domains within the TRP family, we performed phylogenetic ...

[PDF] Sequence and structural conservation reveal fingerprint ...

An exceptionally conserved set of residues is reported, composed of twelve residues localized at equivalent three-dimensional positions in TRP channels from ...

Sequence and structural conservation reveal fingerprint residues in ...

Transient Receptor Potential (TRP) cation channels, related to voltage-gated channels, appeared before plants and animals diverged in evolution ...

Sequence and structural conservation reveal fingerprint residues in ...

Sequence and structural conservation reveal fingerprint residues in TRP channels. Cabezas-Bratesco, D.; Mcgee, F.A.; Colenso, C.K.; Zavala, K.; Granata, D ...

Structural consequences of sequence patterns in the fingerprint ...

The conservation of this residue in these enzymes, coupled to its close proximity to the 2′ phosphate implied by the necessary similarity in three-dimensional ...

Sequence conservation and structural features that are common ...

Conservation and identity of TRP fingerprint residues in different channels. ... To visualize the position of these fingerprint residues, TRP channel structures ...

Voltage-Gated Sodium Channels: Evolutionary History and ...

Sequence and structural conservation reveal fingerprint residues in TRP channels. 2022, eLife. TRPA1 modulation by piperidine carboxamides suggests an ...

Identification of an Ideal-like Fingerprint for a Protein Fold using ...

To identify the critical conserved residues at three aspects, i.e. sequence, structure and intramolecular interaction, simultaneously, the ...

Sequence conservation and structural features that are common ...

To visualize the position of these fingerprint residues, TRP channel structures ... The sequence logos show the distribution of amino acid ...

Sequence and structural patterns detected in entangled proteins ...

Here, we reveal the existence of specific patterns adopted by protein sequences and structures to deal with backbone self-entanglement.

ProBiS algorithm for detection of structurally similar protein binding ...

In the second step, fingerprint residues are identified in the structure-based sequence alignment as follows. ... sequence conservation in the detection of ...

Conserved sequence - Wikipedia

Residues that are conserved across all sequences are highlighted in grey. ... "Evolutionary conservation of long non-coding RNAs; sequence, structure, function".

Identifying functionally informative evolutionary sequence profiles

... conservation score to each query sequence residue. In order to better distinguish residues conserved for structural or functional reasons, we also separate ...

Finding of residues crucial for supersecondary structure formation

... residues is largely responsible for SSS as well. Preliminary analysis of residue conservation in SP sequences revealed that residues V, I, L, M, F, W, and C ...

Conservation and divergence of structure in 6-TM cation channels ...

... structural analysis presented in here. ... Sequence and structural conservation reveal fingerprint residues in TRP channels. Article. Full-text available. Jun ...

Collaborative Research: GCR: Understanding Epistasis: the Key for ...

The project is motivated by an unanticipated amount of variation in populations, gene families, and phylogenetic groups revealed by DNA sequencing of genes, ...

Evolutionary Conservation of Mechanical Strain Distributions in ...

... residue of the structure. Each color labels a ... Nevertheless, given the relevance of sequence conservation in determining the structure ...

ChimeraX Tutorial: Protein-Ligand Binding Sites

Related tutorials: Coloring by Sequence Conservation, Delta-Opioid Receptor ... Reveal atoms of interacting residues; Log ...and turn off (uncheck) ...