Single|cell Proteomic DataBase

Single-cell Proteomic DataBase (SPDB) is a comprehensive repository for general single-cell proteomic data, encompassing both antibody-based and mass ...

Single-cell protein data - Single-cell Proteomics - Slavov Lab

Single-cell proteomics datasets. The datasets are acquired by mass spectrometry and are linked to the associated metadata.

a comprehensive resource and knowledgebase for proteomic data ...

Abstract. The single-cell proteomics enables the direct quantification of protein abundance at the single-cell resolution, ...

SingPro: a knowledge base providing single-cell proteomic data

A database that not only provides SCP raw data but also explicitly describes experimental details and protein expression profiles.

Single Cell Proteomics - Bruker

From Bulk to Single Cells: Deeper Proteomic Insights Single Cell ... Break the data analysis bottleneck in single-cell proteomics. With Bruker ...

Single-cell proteomics enabled by next-generation sequencing or ...

In these cases, a data-analysis approach termed 'match between runs' enables quantification of peptides identified in separate DDA experiments, ...

Single Cell Proteomics data processing and analysis • scp

This vignette will guide you through some common steps of mass spectrometry-based single-cell proteomics (SCP) data analysis.

The Human Protein Atlas

... proteomics, and systems biology. Sections include the Tissue, Brain, Single Cell Type, Tissue Cell Type, Pathology, Disease Blood Atlas, Immune Cell, Blood ...

Uncovering biology by single-cell proteomics - Nature

Single-cell proteomics that can answer key biological questions regarding how protein expression, post-translational modifications, and protein interactions ...

Home | Single-cell proteomics by mass spectrometry | Slavov ...

Single-cell proteomics methods and data from the Slavov Laboratory | Single-cell protein analysis by mass spectrometry.

Single-Cell Proteomics | Thermo Fisher Scientific - US

Move away from bulk sample to single cell proteomics analysis with an Orbitrap mass spectrometry workflow designed in collaboration with the scientific ...

Proteomic Data Commons

Release of mass spectrometry based metabolomics data generated by CPTAC (May 2024) . Release of CPTAC non-Clear Cell Renal Cell Carcinoma studies (May 2024) .

Single cell proteomics | PNNL

... proteomic assays, advanced computational biology, and proteomic data interpretation and modeling. The team is sharpening promising nano-separation and ...

Single-cell proteomic and transcriptomic analysis of macrophage ...

... proteins allow us to discern single cells by cell type. Furthermore, the data uncover a continuous gradient of proteome states for the ...

The Current State of Single‐Cell Proteomics Data Analysis

Proteomics data analysis encompasses three main tasks: spectral data processing, quantitative data processing, and downstream data analysis.

Integrating DIA Single-Cell Proteomics Data with the DiagnoMass ...

In this study, we present data generated from the integration of DIA single-cell proteomics with a version of the DiagnoMass Proteomic Hub that was adapted to ...

Challenges and Opportunities for Single-cell Computational ...

Two common methods exist for data acquisition in bottom-up proteomics: data-dependent analysis (DDA) and data-independent analysis (DIA). For ...

Report Microscopy-based single-cell proteomic profiling reveals ...

After irradiating U2OS-53BP1-mScarlet cells with 2 Gy IR, cells were immediately subjected to UFO for data acquisition and imaging for 24 h (3 ...

scpdata: Single-Cell Proteomics Data Package - Bioconductor

Description The package disseminates mass spectrometry (MS)-based single-cell proteomics (SCP) datasets. The data were collected from published work and ...

Proteomics Database Resource

Proteomics Database is a database of protein expression data for tissues and cell lines aggregated from many proteomics studies. Citation(s). Wilhelm, M et ...