Single‐marker and haplotype‐based genome‐wide association ...

In pig populations where the haplotype structure or the level of linkage between QTL alleles and SNPs is not known, it is useful to use both methodologies to ...

Single-marker and haplotype-based genome-wide association ...

We present the results of single-marker and haplotypes-based genome-wide association studies for the number of teats in two large cohorts of heavy pig breeds.

We present the results of single-marker and haplotypes-based genome-wide association studies for the number of teats in two large cohorts of heavy pig breeds.

Exploiting single-marker and haplotype-based genome-wide ...

GWAS for the number of teats were carried out in more than 1000 Italian Duroc pigs. •. A QTL located on chromosome 7 (VRTN gene region) was identified. •.

Haplotype-Based, Genome-Wide Association Study Reveals Stable ...

Recent studies on wheat and other crops have shown that GWAS analysis with haplotypes can be superior to single marker–based analysis in terms ...

Exploiting single-marker and haplotype-based genome-wide ...

Here, to dissect the genomic architecture of this trait in the Italian Duroc pig population, we present the results of genome-wide association studies in this ...

Features and applications of haplotypes in crop breeding - Nature

We have also compared the efficiency of haplotype- and individual SNP-based markers in the GWAS and GS analyses. Besides, the challenges ...

Single Marker and Haplotype-Based Association Analysis of ... - PLOS

However, because patterns of variation within genomes are inherited as blocks, clustering markers into haplotypes for genome-wide scans could be a worthwhile ...

Single Marker and Haplotype-Based Association - ProQuest

However, because patterns of variation within genomes are inherited as blocks, clustering markers into haplotypes for genome-wide scans could be a worthwhile ...

SNP-based and haplotype-based genome-wide association on drug ...

A total of 1000 Chinese users of illicit drugs and 9693 healthy controls were enrolled and underwent single nucleotide polymorphism (SNP)-based ...

Haplotype-Based Genome-Wide Prediction Models Exploit Local ...

In most genome-wide prediction models, effects of molecular markers such as single nucleotide polymorphisms (SNPs) were used as explanatory variables (Cuyabano ...

Genome-wide association study, haplotype analysis, and ... - Frontiers

Also, genetic values of individual genotypes were estimated based on the ... To date, the effectiveness of marker-based gene pyramiding ...

Genome-wide haplotype association study in imaging genetics ...

... markers using Genome-Wide Association Study (GWAS) ... Haplotype tests exhibit different sensitivity compared to single SNP-based associations.

Comparing Single‐SNP, Multi‐SNP, and Haplotype‐Based ...

This study aimed to explore different GWAS approaches (single-SNP, multi-SNP, and haplotype-based) to establish SNP–trait associations.

Genome-wide haplotype-based association analysis of key traits of ...

The proportion of the phenotypic variations explained by the individual SNPs varied between 7%, for the SNP S1_285330124 (located on chromosome ...

Haplotype-Based Genome-Wide Association Study and ... - MDPI

Many studies have explored the effect of SNPs on carcass traits in Hanwoo [3,4,5,6,7,8,9,10,11] including one [3], which explored genetic ...

A fast-linear mixed model for genome-wide haplotype association ...

Based on the EMMAX method, the Single-RunKing software will run genome ... based on the selected genetic markers. If the resource ...

Haplotype-Based Single-Step GWAS for Yearling Temperament in ...

Haplotype blocks (i.e., haploblocks) are sets of adjacent single nucleotide polymorphisms (SNPs) markers expected to be in higher linkage disequilibrium (LD) ...

Selecting Closely-Linked SNPs Based on Local Epistatic Effects for ...

... genotype-phenotype associations in GWAS are single nucleotide polymorphism (SNP) markers. ... Haplotype-based genome-wide prediction models exploit local ...

Haplotype-based genome wide association study using a ... - bioRxiv

One problem caused by rare variants is that the non-causal markers that have a strong linkage disequilibrium (LD) with one causal rare variant ...