- Single|cell network biology for resolving cellular heterogeneity in ...🔍
- A scalable SCENIC workflow for single|cell gene regulatory network ...🔍
- Single|cell transcriptomics unveils gene regulatory network plasticity🔍
- Constructing local cell|specific networks from single|cell data🔍
- GENIX enables comparative network analysis of single|cell RNA ...🔍
- Single|cell network analysis reveals gene expression programs for ...🔍
- hdWGCNA in single|cell data🔍
- Inference of single|cell network using mutual information for scRNA ...🔍
Single Cell Network Analysis
Single-cell network biology for resolving cellular heterogeneity in ...
Network biology has served as a useful tool for the study of complex cellular systems by providing a glimpse into the functional organization of ...
scHumanNet: a single-cell network analysis platform for the study of ...
A single-cell network analysis platform for resolving cellular heterogeneity across gene functions in humans.
A scalable SCENIC workflow for single-cell gene regulatory network ...
This protocol explains how to perform a fast SCENIC analysis alongside standard best practices steps on single-cell RNA-sequencing data using software ...
scGRN: a comprehensive single-cell gene regulatory network ...
We have implemented multiple online tools for effective GRN analysis, including differential TF–target network analysis, TF enrichment analysis, ...
Single-cell transcriptomics unveils gene regulatory network plasticity
Single-cell regulatory networks can be used to provide an unbiased, hypothesis-free classification of the biological importance of genes, ...
scGENA: A Single-Cell Gene Coexpression Network Analysis ...
This study presents a new framework called scGENA (single-cell gene coexpression network analysis) for GCN analysis based on scRNA-seq data.
Constructing local cell-specific networks from single-cell data - PNAS
We develop an approach, locCSN, that estimates cell-specific networks (CSNs) for each cell, preserving information about cellular heterogeneity that is lost ...
GENIX enables comparative network analysis of single-cell RNA ...
GENIX streamlines the construction of gene association networks from scRNA-seq data. GENIX leverages a network-based comparative model to identify condition- ...
Single-cell network analysis reveals gene expression programs for ...
Abstract. Single-cell RNA-sequencing datasets of Arabidopsis roots have been generated, but related comprehensive gene co-expression network ...
hdWGCNA in single-cell data - Sam Morabito
This tutorial covers the basics of using hdWGCNA to perform co-expression network analysis on single-cell data.
Inference of single-cell network using mutual information for scRNA ...
It has been known that network modeling by estimating the associations between genes could better reveal dynamic changes in biological systems.
IReNA: Integrated regulatory network analysis of single-cell ...
We developed integrated regulatory network analysis (IReNA) for network inference through the integrated analysis of scRNA-seq and scATAC-seq data.
Single-cell RNA-seq & network analysis using Galaxy and Cytoscape
Single-cell RNA-seq & network analysis using Galaxy and Cytoscape ... This course utilises Galaxy pipelines, an online open-access resource that allows even the ...
Network modeling of single-cell omics data - Portland Press
Typically, these high-throughput single-cell transcriptome technologies are based on counting transcript fragments from the 3′-end which are then aligned to ...
Single-Cell Differential Network Analysis with Sparse Bayesian ...
We present a sparse hierarchical Bayesian factor model to identify differences across network structures from different biological conditions in scRNA-seq data.
Cytoscape single-cell analysis - EMBL-EBI
This session describes a network analysis workflow for differentially expressed genes from an RNA-Seq experiment.
Inferring gene regulatory network from single-cell transcriptomes ...
We utilize the weighted gene co-expression analysis to build a prior regulatory graph of gene and a graph autoencoder to deconstruct the latent ...
[2205.11274] Single-cell gene regulatory network analysis for mixed ...
In this paper, we consider inferring GRNs in single cells based on single cell RNA sequencing (scRNA-seq) data.
scANANSE gene regulatory network and motif analysis of single-cell ...
We developed scANANSE, a software pipeline for gene regulatory network analysis and motif enrichment using single-cell RNA and ATAC datasets.
Single Cell Regulatory Network Analysis | CD Genomics
CD Genomics as one of the providers of Single Cell Regulatory Network Analysis, uses cutting-edge bioinformatics analysis technology such as single-cell ...