Single Cell Proteomics data processing and analysis • scp

This vignette will guide you through some common steps of mass spectrometry-based single-cell proteomics (SCP) data analysis.

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis • scp

The scp package is used to process and analyse mass spectrometry-based single cell proteomics data. It relies on the QFeatures package to manage and process ...

Standardized Workflow for Mass-Spectrometry-Based Single-Cell ...

Standardized Workflow for Mass-Spectrometry-Based Single-Cell Proteomics Data Processing and Analysis Using the scp Package. Methods Mol Biol. 2024:2817:177 ...

scp - Bioconductor

Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics data. The package is an extension to the 'QFeatures ...

SingPro: a knowledge base providing single-cell proteomic data

An SCP study asks for sophisticated data processing and analysis procedure, and the raw data should be provided to select suitable process (19– ...

Processing and analysing single-cell proteomics with the scp ...

... scp Bioconductor package to manage, process and analyse single-cell proteomics data. The hands-on workshop will start by introducing the QFeatures class and ...

Data acquisition approaches for single cell proteomics - Ghosh

Two major challenges in SCP are the limited material in single-cell samples necessitating highly sensitive analytical techniques and the ...

Single-cell Proteomics Quantification Quality Control Emerges as a ...

... process SCP data. ... By adhering to the workflow established in this study, a standardized and efficient pipeline for SCP data analysis can be implemented.

Computational analysis | Single-cell proteomics by mass spectrometry

scp package; SCeptre; SCoPE2 pipeline. Enhancing peptide identifications ... processing, and analyzing mass spectrometry-based single-cell proteomics data.

Data acquisition approaches for single cell proteomics - PubMed

Single-cell proteomics (SCP) aims to characterize the proteome of individual cells, providing insights into complex biological systems.

scpdata: Single-Cell Proteomics Data Package - Bioconductor

Standardised workflow for mass spectrometry- based single-cell proteomics data processing and analysis using the scp package. arXiv. DOI:10.48550/arXiv ...

UCLouvain-CBIO/2022-scp-data-analysis: The current state ... - GitHub

The current state of single-cell proteomics data analysis - UCLouvain-CBIO/2022-scp-data-analysis.

AM-DMF-SCP: Integrated Single-Cell Proteomics Analysis on an ...

Here, we develop an integrated sample processing on an active-matrix digital microfluidic chip for single-cell proteomics (AM-DMF-SCP).

Standardized Workflow for Mass-Spectrometry-Based Single-Cell ...

Standardized Workflow for Mass-Spectrometry-Based Single-Cell Proteomics Data Processing and Analysis Using the scp Package. Protocol; First ...

Home | Single-cell proteomics by mass spectrometry | Slavov ...

Single-cell proteomics methods and data from the Slavov Laboratory | Single-cell protein analysis by mass spectrometry.

Uncovering biology by single-cell proteomics - Nature

... data analysis and developed a program, SCPCompanion, that enables quality-control analysis of SCP-MS data. While Cheung et al. discuss the ...

Utilizing Scp for the analysis and replication of single-cell ... - bioRxiv

In this work, we will focus on the processing of mass spectrometry-based single cell quantitative data, as produced from the raw data using ...

Standardized Workflow for Mass-Spectrometry-Based Single-Cell ...

Standardized Workflow for Mass-Spectrometry-Based Single-Cell Proteomics Data Processing and Analysis Using the scp Package. Authors: Samuel Grégoire 2 ...

a comprehensive resource and knowledgebase for proteomic data ...

... single-cell proteomic data, such as the representative package scpdata ( ... L. The current state of single-cell proteomics data analysis . Curr ...

Single Cell Proteomics - Bruker

Break the data analysis bottleneck in single-cell proteomics. With Bruker ... dia-PASEF data processing in directDIA+ including all cells as well as 3 ...