The Design of a Pipeline for Genome|Wide Functional Annotation of ...

The Design of a Pipeline for Genome-Wide Functional Annotation of ...

The context for bioinformatics continues to change as new technology brings more varied data in greater volume. We present the preliminary design of a ...

Putting It All Together: The Design of a Pipeline for Genome-Wide ...

Download Citation | Putting It All Together: The Design of a Pipeline for Genome-Wide Functional Annotation of Fungi in the Modern Era of “-Omics” Data and ...

An Integrated Pipeline for the Genome-Wide Analysis of ...

Transcription factors (TFs) play critical roles in regulating gene expression. Determining transcription factor binding sites (TFBSs) is challenging because the ...

The DAWGPAWS pipeline for the annotation of genes and ... - NCBI

The DAWGPAWS genome annotation pipeline fills an important need in the annotation of plant genomes by generating computational evidences in ...

a pipeline for the assembly and annotation of microbial genomes

The reconstruction of microbial genome sequences by bioinformatic pipelines and the consequent functional annotation of their genes' ...

Genome-wide association studies | Nature Reviews Methods Primers

In silico fine-mapping can find credible variants that modulate the expression patterns and functions of causal genes (SNP to gene mapping) or ...

Pipeline design to identify key features and classify the ...

We implemented the pipeline in a large-scale genetic data-set of lung cancer (LC) of small number of patients to define prognostic models of ...

ToxCodAn-Genome: an automated pipeline for toxin-gene ...

AbstractBackground. The rapid development of sequencing technologies resulted in a wide expansion of genomics studies using venomous ...

FAVOR: functional annotation of variants online resource and ...

These large WGS/WES studies have identified hundreds of millions of coding and non-coding genetic variants across the human genome from hundreds ...

GAAP: A Genome Assembly + Annotation Pipeline - Kong - 2019

Then, in the annotation step, gene locations are identified within the base sequences, and the structures and functions of these genes are ...

Rapid genome functional annotation pipeline anchored to ... - bioRxiv

The current annotation of the P. domesticus genome is available at Ensembl Rapid Release site, which currently only focuses on gene set building ...

AnnotaPipeline: An integrated tool to annotate eukaryotic proteins ...

The funders had no role in the study design, data analysis ... FA-Nf: A functional annotation pipeline for ... Keywords: workflow, proteogenomics, genome annotation ...

A multi-source domain annotation pipeline for quantitative ...

Learning about the functional activity of environmental microbial communities is a crucial step to understand microbial interactions and large- ...

Empirical design of a variant quality control pipeline for whole ...

Empirical design of a variant quality control pipeline for whole genome ... functional analysis of variants. Therefore ... DNAp: A Pipeline for DNA- ...

User-friendly genome assembly and gene annotation pipelines for ...

With the advance in sequencing technologies, assembling large vertebrate genomes using a combination of low-costing short reads and noisy long ...

FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model ...

However, the assembly of the genome and its structural gene annotation (the gene and transcript map) is just an initial step in answering some biological ...

Structural and Functional Annotation of Eukaryotic Genomes with ...

The NCBI pipeline first identifies repetitive DNA sequences for masking; then aligns transcripts, RNA-seq reads, and proteins to the genome ...

A pipeline for the identification and characterization of chromatin ...

Large-scale genome sequencing projects are now more feasible and provide a highly specific approach to distinguish specific changes in gene regulating histone ...

Newly developed DFAST, a pipeline for prokaryotic genome ...

function of the target potential gene by analogy. However, the results obtained by functional annotation cannot be used without manual modification due to ...

Expasy: SIB Swiss Institute of Bioinformatics

Operated by the SIB Swiss Institute of Bioinformatics, Expasy, the Swiss Bioinformatics Resource Portal, provides access to scientific databases and ...