hdWGCNA in single|cell data
hdWGCNA in single-cell data - Sam Morabito
This tutorial covers the basics of using hdWGCNA to perform co-expression network analysis on single-cell data.
smorabit/hdWGCNA: High dimensional weighted gene co ... - GitHub
hdWGCNA is an R package for performing weighted gene co-expression network analysis (WGCNA) in high dimensional transcriptomics data such as single-cell RNA- ...
hdWGCNA identifies co-expression networks in high-dimensional ...
hdWGCNA builds networks of genes using correlation information in specific cell subpopulations and spatial domains. Applications of hdWGCNA in autism spectrum ...
hdWGCNA identifies co-expression networks in high-dimensional ...
present hdWGCNA, an open-source R package for gene co- expression network analysis in single-cell and spatial transcriptomics data. hdWGCNA ...
high dimensional WGCNA (hdWGCNA) - Swarup Lab
hdWGCNA requires data formatted as Seurat objects, one of the most ubiquitous formats for single-cell data. Check out the hdWGCNA in single-cell data ...
Vignettes overview • hdWGCNA - Sam Morabito
These tutorials cover the essentials of performing co-expression network analysis in single-cell transcriptomics data, and visualizing the key results.
hdWGCNA identifies co-expression networks in high-dimensional ...
Here we present hdWGCNA, a comprehensive framework for analyzing co-expression networks in high-dimensional transcriptomics data such as single-cell and ...
hdWGCNA in spatial transcriptomics - Sam Morabito
Visium ST generates sparse gene expression profiles in each spot, thus introducing the same potential pitfalls as single-cell data for co- ...
HdWGCNA for single Cell ATACseq · Issue #292 - GitHub
Hi @smorabit, I would like to know if it is possible to use hdwgcna with single Cell ATAC coverage data instead of the SC RNA-seq expression ...
Articles • hdWGCNA - Sam Morabito
Tutorial for applying the core functions of hdWGCNA in single-cell data. Consensus network analysis. Tutorial for performing consensus co-expression network ...
hdWGCNA identifies co-expression networks in high-dimensional ...
Prior to analysis with the hdWGCNA R package, the input single-cell or spatial dataset must be fully processed. This includes quality control, data ...
hdWGCNA with pseudobulk data - Sam Morabito
“Pseudobulk” refers to aggregating gene expression profiles from all of the cells of a particular group (cluster, cell type, etc) from a single ...
Projecting modules to new datasets • hdWGCNA - Sam Morabito
A prerequisite for this tutorial is constructing a co-expression network in a single-cell or spatial transcritpomic dataset, see the single-cell basics or the ...
How to do gene correlation for single-cell RNAseq data (part 2 ...
hdWGCNA constructs a gene-gene correlation adjacency matrix to infer co-expression relationships between genes. The correlations are raised to a ...
Co-expression module dynamics with pseudotime • hdWGCNA
hdWGCNA in single-cell data · hdWGCNA in spatial transcriptomics data · Isoform ... Next, load the dataset into R and the necessary packages for hdWGCNA and ...
Enrichment analysis • hdWGCNA - Sam Morabito
First, we first need to load the data and the required libraries. # single-cell analysis package library(Seurat) ...
Isoform co-expression network analysis with PacBio MAS-Seq
Before working through this tutorial, we recommend becoming familar with the basics of hdWGCNA using our single-cell tutorial. Download the tutorial data. Here ...
hdWGCNA identifies co-expression networks in high-dimensional ...
26) 14 to construct a co-expression network based on single-cell data. Initially, we input genes expressed in at least 5% of the cells and ...
Single-cell and WGCNA uncover a prognostic model and potential ...
Single-cell transcriptome sequencing (scRNA-seq) can provide accurate gene expression data for individual cells. In this study, a new prognostic ...
Study On Molecular Mechanism of Intervertebral Disc Degeneration ...
We analyzed the single-cell data and screened cells that closely associated with the development of IVDD. The differential expression of feature ...