pathway analysis tools for xenopus

pathway analysis tools for xenopus - Biostars

JFI: In your case you should use 'update' mode from GeneSCF because, GeneSCF download comes with only 'Human' database. The update mode will ...

Phylogeny, Functional Annotation, and Protein Interaction Network ...

From the genome annotation and pathway analysis using KOBAS, we identified 16 pathways in the Xenopus tropicalis genome. From the STRING ...

Xenbase: key features and resources of the Xenopus model ...

Xenbase also enhances the value of Xenopus data through high-quality curation, data integration, providing bioinformatics tools optimized for Xenopus ...

On-line Resources for Xenopus - PMC - NCBI

It is the only Xenopus specific resource to integrate different experimental data. Xenbase includes genomic, gene expression, tissues and development, ...

Xenopus - Horizon Discovery

Fully-sequenced Xenopus Gene Collection (XGC) and IMAGE cDNA clones contain full coding sequences of expressed genes from Xenopus laevis and Xenopus tropicalis.

Xenopus tropicalis - Reactome Pathway Database

Reactome is pathway database which provides intuitive bioinformatics tools for the visualisation, interpretation and analysis of pathway knowledge.

Xenbase Home

Xenbase is a web-accessible resource that integrates all the diverse biological, genomic, genotype and phenotype data available from Xenopus research. Learn ...

Molecular analysis of a self-organizing signaling pathway for ... - PNAS

Xenopus embryos provide a favorable material to dissect the sequential steps that lead to dorsal–ventral (D-V) and anterior–posterior (A-P) cell ...

Review article Expanding the genetic toolkit in Xenopus

The design and application of genome editing tools for Xenopus has been streamlined by incorporating online software to design target ...

Transcriptome analysis of Xenopus orofacial tissues deficient in ...

... network with Ingenuity Pathway Analysis software (Fig. 4 and Table 4). The majority of genes identified in this network were transcription ...

Techniques and probes for the study of Xenopus tropicalis ...

The frog Xenopus laevis has provided significant insights into developmental and cellular processes. However, X. laevis has an ...

Gene expression screening in Xenopus identifies molecular ...

Two methods were applied to these distance data. Split analysis (Bandelt and Dress, 1992) generally produces a network displaying the distances of the ...

Home - Reactome Pathway Database

Reactome is pathway database which provides intuitive bioinformatics tools for the visualisation, interpretation and analysis of pathway knowledge.

Xenbase - Oxford Academic

Xenbase enhances the value of Xenopus data through high-quality curation, ontology development, data integration, bioinformatics tools optimized ...

Activation of P53 pathway contributes to Xenopus hybrid inviability

We reasoned that P53 pathway might be activated in the exogenous DNA-induced gastrulation defect model. Indeed, western blot analysis revealed a ...

Genome evolution in the allotetraploid frog Xenopus laevis - Nature

... analysis (Supplementary Note 3 and Methods). These complementary ... conducted the gene and pathway analysis. D.S.R., A.M.S., T.Kw ...

Characterizing Xenopus tropicalis endurance capacities ... - bioRxiv

These methods make use of gene sets determined a priori and they are most commonly applied to pathway analysis. To aid results navigation ...

High-resolution analysis of gene activity during the Xenopus mid ...

We performed GO analysis (Materials and Methods) ... A. M.. (. 2006. ). Global analysis of the transcriptional network controlling Xenopus endoderm formation.

Transcriptomic analysis of the trade-off between endurance and ...

In this study we identify the genes, signaling pathways, and regulatory processes possibly responsible for the trade-off between burst performance and ...

Temporal transcriptomic profiling reveals dynamic changes in gene ...

Gene ontology (GO) analysis and PPI network analysis were performed after conversion of the X. laevis genes to the human ortholog genes as ...