sctransform package
satijalab/sctransform: R package for modeling single cell ... - GitHub
R package for modeling single cell UMI expression data using regularized negative binomial regression - satijalab/sctransform.
A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative ...
Using sctransform in Seurat - Satija Lab
The glmGamPoi package substantially improves speed and is used by default if installed, with instructions here. # store mitochondrial percentage in object ...
R package for normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression.
SCTransform function - RDocumentation
The sctransform package is available at https://github.com/satijalab/sctransform. Use this function as an alternative to the NormalizeData, FindVariableFeatures ...
Introduction to SCTransform, v2 regularization • Seurat - Satija Lab
We will install sctransform v2 from CRAN. We will also install the glmGamPoi package which substantially improves the speed of the learning ...
sctransform: Variance Stabilizing Transformations for Single Cell ...
The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also ...
Single Cell RNA-seq normalization using regularized negative binomial regression.
R package for normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression.
sctransform source: R/vst.R - rdrr.io
sctransform. Variance Stabilizing Transformations for Single Cell UMI Data. Package index. Search the sctransform package. Vignettes. README.md · Functions. 87.
Normalization and variance stabilization of single-cell RNA-seq data ...
... package sctransform, with a direct interface to our single-cell toolkit Seurat ... Our approach can be applied to any UMI-based scRNA-seq dataset ...
install.packages("sctransform"). 0.4.1 by Saket Choudhary, a year ago. https://github.com/satijalab/sctransform. Report a bug at https://github.com/satijalab ...
sctransform package - RDocumentation
sctransform. R package for modeling single cell UMI expression data using regularized negative binomial regression. This packaged was ...
Binary package r-cran-sctransform/0.3.5-1 in crimson @ pureos
r-cran-sctransform - 0.3.5-1 main. A normalization method for single-cell UMI ... same regression framework, this package also provides functions for
r:sctransform packages - Repology
r-sctransform. 0.4.1. Summary: Variance stabilizing transformations for Single Cell UMI Data; Link(s):. Package ...
Debian -- Package Search Results -- r-cran-sctransform
Found 2 matching packages. Exact hits. Package r-cran-sctransform. bullseye (oldstable) (gnu-r): Variance Stabilizing Transformations for Single Cell UMI ...
r-sctransform 0.4.1 - Guix packages
r-sctransform 0.4.1. Variance stabilizing transformations for Single Cell UMI Data. This package provides a normalization method for single-cell UMI count data ...
SCTransform - Partek Flow Documentation
SCTransform() documentation https://www.rdocumentation.org/packages/Seurat/versions/3.1.4/topics/SCTransform; Saket Choudhary, Rahul Satija ...
Tools for Single Cell Genomics • Seurat - Satija Lab
SCTransform, v2 regularization · Using Seurat with multi-modal data · Seurat ... The BPCells package enables high-performance analysis via innovative bit ...
SingleR and SCTransform - Bioconductor Forum
I am using `Seurat::CellCycleScoring()` to assign cell cycle stages to cells and late… DiffBind installation fails: Error: package 'BiocGenerics ...