shubhamchandak94/Spring

shubhamchandak94/Spring: FASTQ compression - GitHub

SPRING is a compression tool for Fastq files (containing up to 4.29 Billion reads). Note: If you want to use SPRING only as a tool for reordering reads.

Releases · shubhamchandak94/Spring - GitHub

FASTQ compression. Contribute to shubhamchandak94/Spring development by creating an account on GitHub.

SPRING: a next-generation compressor for FASTQ data

SPRING can be downloaded from https://github.com/shubhamchandak94/SPRING. Supplementary information. Supplementary data are available at Bioinformatics ...

SPRING: A next-generation compressor for FASTQ data

→ Available at https://github.com/shubhamchandak94/SPRING/. SPRING. • Perfectly lossless mode - Entire FASTQ file stored as it is. • Information-preserving ...

modules/spring_compress - nf-core

SPRING is a compression tool for Fastq files (containing up to 4.29 Billion reads). github.com/shubhamchandak94/Spring ...

SPRING: a next-generation compressor for FASTQ data - PubMed

SPRING: a next-generation compressor for FASTQ data. Bioinformatics. 2019 Aug 1;35(15):2674-2676. doi: 10.1093/bioinformatics/bty1015. Authors. Shubham ...

Spring | Anaconda.org

bioconda / packages / spring 1.1.1. 0 · License: Free for non-commercial use · Home: https://github.com/shubhamchandak94/Spring · 10893 total downloads · Last ...

SPRING: a next-generation compressor for FASTQ data

Github: https://github.com/shubhamchandak94/SPRING/. 195 GB. 25x human. FASTQ. 2 hours. 32 GB RAM. 8 threads. 7 GB. SPRING archive. 26 minutes. 6 GB RAM. 8 ...

SPRING: a next-generation compressor for FASTQ... | Slides

[version 1; not peer reviewed]. Shubham Chandak1, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, ...

type/ - nf-core

github.com/shubhamchandak94/Spring github.com/shubhamchandak94/Spring/blob/master/README.md https://github.com/shubhamchandak94/Spring 10.1093/bioinformatics/ ...

SPRING: a next-generation compressor for FASTQ data | Request PDF

Availability and implementation: SPRING can be downloaded from https://github.com/shubhamchandak94/SPRING. Supplementary information: Supplementary data are ...

SPRING: FASTQ compression - Supplementary Data

More examples for usage of SPRING with various options are available in the Github README (https: · //github.com/shubhamchandak94/SPRING/blob/master/README.md).

Shubham Chandak - Amazon Web Services (AWS) - LinkedIn

I am Shubham Chandak (शुभम चांडक), an applied scientist at Amazon working in the AWS Annapurna ML team. I completed my PhD in Electrical Engineering at ...

spring - OpenEBench

SPRING. https://github.com/shubhamchandak94/Spring. bioconda biotools. Accessibility : Bioschema SSL. Distribution : VRESourcecode. CMD. WEB. Version :.

Shubham Chandak - dblp

SPRING: a next-generation compressor for FASTQ data. Bioinform. 35(15): 2674-2676 (2019). [c4]. view. electronic edition via DOI · unpaywalled ...

ALAPY and fastqz - Encode's Forum

(Align to a genome and store the deltas) More modern fastq compressors (eg Spring ... ( https://github.com/shubhamchandak94/Spring ). Quote Originally Posted by ...

Genie: an MPEG-G conformant software to compress genomic data.

[2] Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, and Tsachy. Weissman. 2018. SPRING: A next-generation compressor for FASTQ ...

GeneSqueeze: A Novel Lossless, Reference-Free Compression ...

Grebnov, I. High performance data compression library. http://libbsc.com/. Chandak, S. Spring v1.1.1. https://github.com/shubhamchandak94 ...

Improved read/write cost tradeoff in DNA-based data storage ... - OUCI

Publisher: Cold Spring Harbor Laboratory. Authors: Shubham Chandak; Kedar Tatwawadi; Billy Lau; Jay Mardia; Matthew Kubit; Joachim Neu; Peter Griffin; Mary ...

Itschak Weissman - Stanford Profiles

Availability: SPRING can be downloaded from https://github.com/shubhamchandak94/SPRING.Supplementary Information: Supplementary data are available at ...