snpEff on the NIH Biowulf cluster
snpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
snpEff on the NIH Biowulf cluster - GitHub Gist
snpEff on the NIH Biowulf cluster. GitHub Gist: instantly share code, notes, and snippets.
Scientific Applications on NIH HPC Systems
A limited number of Schrödinger applications are available on the Biowulf cluster through the Molecular Modeling Interest Group. Most are available through ...
/gsx is retired from the cluster, thus if you see some errors like this: ... snpeff \ --outdir /data/$USER/sarek/ \ --genome GATK.GRCh38 \ --igenomes_base ...
Information about job submission, job management and job monitoring on the NIH HPC Biowulf cluster. Acknowledgement/Citation. The continued ...
Nih biowulf computational cluster - OSTR - National Cancer Institute
The NIH Biowulf Cluster provides researchers with a world-class system to assist in solving complex biomedical problems as diverse as gene variation.
SnpEff & SnpSift - GitHub Pages
Genetic variant annotation, and functional effect prediction toolbox. It annotates and predicts the effects of genetic variants on genes and proteins.
stephenturner's gists · GitHub
4 stars · @seandavi · seandavi / README.md. Last active 10 months ago. snpEff on the NIH Biowulf cluster. Usage. To use these scripts: Clone this repository: ...
UTR deletion of the essential gene small ovary in Drosophila
... snpEFF (Cingolani et al. ... This work utilized the computational resources of the NIH High-Performance Computing Biowulf cluster (http://hpc.nih.gov).
Large-scale rare variant burden testing in Parkinson's disease
This study used the high-performance computational capabilities of the Biowulf. Linux cluster at the National Institutes of Health (http://hpc.nih. gov) ...
Genome-wide Analyses Identify KIF5A as a Novel ALS Gene
This study utilized the high-performance computational capabilities of the Biowulf Linux cluster at the National Institutes of Health, Bethesda, Maryland (http ...
A Complete Pedigree-Based Graph Workflow for Rare Candidate ...
First, SnpEff ... All pipelines and evaluations used the computational resources of the NIH HPC Biowulf cluster at the National Institutes of.
A complete pedigree-based graph workflow for rare candidate ...
All pipelines and evaluations used the com- putational resources of the NIH HPC Biowulf cluster at the ... single nucleotide polymorphisms, SnpEff. Fly ...
Archived BTEP Classes & Events - Bioinformatics
Multi-tool variant annotation (AVIA, SnpEff, Oncotator, etc.) Example ... NIH Biowulf cluster for further analysis? Want to transform your BCL files ...
Genotype-phenotype association and variant characterization in ...
(Rockville, MD, USA); this work utilized the computational resources of the NIH High Performance Computing Biowulf cluster. Acknowledgments.
Genomic Diversity of SARS-CoV-2 During Early Introduction into the ...
We used the high-performance computational capabilities of the Biowulf Linux cluster ... biowulf.nih.gov) to perform these downsampling analyses.
A complete pedigree-based graph workflow for rare candidate ...
All pipelines and evaluations used the com- putational resources of the NIH HPC Biowulf cluster at the ... single nucleotide polymorphisms, SnpEff ...
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer
... NIH Biowulf Linux cluster. A host-specific local clock32 was used to ... Obtained vcf files were annotated with SnpEff59 v 4.5, and NC_045512.
PRINCY FRANCIS | DIGITAL CV - GitHub Pages
... snpEff, Delly, SVprops, IGV, MACS, PeakSeq, SPAdes, VCAKE ... • Operating systems: Unix/Linux systems including the NIH HPC Biowulf cluster environments ...
Genomic diversity of SARS-CoV-2 during early introduction into the ...
We used the high-performance computational capabilities of the Biowulf Linux cluster at the NIH (http://biowulf.nih.gov) to perform these downsampling analyses.