xihaoli/STAARpipeline|Tutorial

Step 1: Fit STAAR or MultiSTAAR null model · Script: STAARpipeline_Null_Model.r or STAARpipeline_Null_Model_GENESIS.r or STAARpipeline_Null_Model_Multi.r.

xihaoli/STAARpipeline - GitHub

Description. STAARpipeline is an R package for phenotype-genotype association analyses of biobank-scale WGS/WES data, including single variant analysis and ...

Software

An R package for performing variant-Set Test for Association using Annotation infoRmation (STAAR) procedure in whole-genome sequencing studies.

STAARpipeline for Analyzing Whole-Genome/Whole-Exome ... - rdrr.io

xihaoli/STAARpipeline: STAARpipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data · Getting started · Browse package contents · Package details ...

xihaoli/STAARpipeline API and function index - rdrr.io

API for xihaoli/STAARpipeline. STAARpipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data. Global functions. Dynamic_Window_SCANG, Man page Source ...

xihaoli/STAARpipeline: STAARpipeline_v0.9.7 - Zenodo

STAARpipeline package beta version v0.9.7 allows for the analysis of multiple correlated traits using MultiSTAAR allows for the analysis of dichotomous ...

Group members - Xihao Li Group @ UNC-Chapel Hill

Google Scholar @xihaoli@X ~ LinkedIn. Email: xihaoli [at] unc.edu. Name, Research ... STAARpipeline enhancement, MS student (BIOS). Zhangziyan Jiang, Power ...

Xihao Li, PhD - UNC Gillings School of Global Public Health

International Student Welcome Guide · Gillings Humanitarian Health Initiative ... [email protected]. 3107D MCGAVRAN-GREENBERG HALL. CHAPEL HILL, NC. 27599 ...

xihaoli/STAARpipeline: STAARpipeline_v0.9.7.1 - DataCite Commons

Cite as. Xihao Li, Elle Mehinovic, & Zilin Li. (2024). xihaoli/STAARpipeline: STAARpipeline_v0.9.7.1 (Version v0.9.7.1) [Computer software]. Zenodo. https ...

xihaoli/STAARpipeline: STAARpipeline_v0.9.7.1 - Zenodo

STAARpipeline package version v0.9.7.1 fixes an issue on format not a string literal and no format arguments [-Werror=format-security] from ...

xihaoli/STAARpipeline: STAARpipeline_v0.9.6 - OpenAIRE - Explore

xihaoli/STAARpipeline: STAARpipeline_v0.9.6. integration_instructions Research software keyboard_double_arrow_right Software 20 Jul 2022 Publisher:Zenodo ...

Powerful, Scalable and Resource-Efficient Meta-Analysis of Rare ...

9.6 were used in simulation and real data analysis and implemented as open-source R packages available at https://github.com/xihaoli/ · STAAR52 and https:// ...

Powerful, scalable and resource-efficient meta-analysis of rare ...

The WGS rare variant pooled analysis was performed using the R package STAAR (version 0.9.6, https://github.com/xihaoli/STAAR). Meta ...

Integrating Common and Rare Variants Improves Polygenic Risk ...

For correspondence: [email protected] [email protected] [email protected] ... STAAR-B (1,1) p-values in STAARpipeline. We identify ...

A statistical framework for powerful multi-trait rare variant analysis in ...

The WGS rare variant single-trait analysis of LDL-C, HDL-C and TG was performed using the R package STAARpipeline (version 0.9.7, https://github.com/xihaoli/ ...

A framework for detecting noncoding rare variant associations of ...

FAVORannotator v1.0.0 (https://github.com/xihaoli/STAARpipeline-Tutorial) was used for functionally annotate the whole-genome data.

A statistical framework for powerful multi-trait rare variant analysis in ...

https://github.com/xihaoli/STAARpipeline). The WGS rare variant ... https://github.com/xihaoli/STAAR and https://github.com/xihaoli/MultiSTAAR ...

A framework for detecting noncoding rare variant associations of ...

... STAAR-SKAT (STAAR-S), and STAAR-ACAT-V ... STAARpipeline is implemented as an open-source R package available at https://github.com/xihaoli/STAARpipeline.

Attachment - PLOS

In page 11 line 23-25, since the authors utilized the STAAR package/tutorial and adapted the scripts based on https://github.com/xihaoli/STAAR/blob/master/docs/ ...

xihaoli/STAARpipeline: STAARpipeline_v0.9.7 ... - DataCite Commons

STAARpipeline package beta version v0.9.7 allows for the analysis of multiple correlated traits using MultiSTAAR.