xihaoli/STAARpipeline API and function index

xihaoli/STAARpipeline API and function index - rdrr.io

API for xihaoli/STAARpipeline. STAARpipeline for Analyzing Whole-Genome/Whole-Exome Sequencing Data. Global functions. Dynamic_Window_SCANG, Man page Source ...

xihaoli/STAARpipelineSummary API and function index - rdrr.io

API for xihaoli/STAARpipelineSummary. Summarization and Visualization of Analysis Results Generated by STAARpipeline. Global functions. Annotate_Single_Variants ...

xihaoli/STAARpipeline - GitHub

(2020). Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies ...

Integrating Common and Rare Variants Improves Polygenic Risk ...

Approaches like. 88. STAARpipeline leverage functional annotations to define variant sets for both coding. 89 and noncoding rare variants47,49 ...

A framework for detecting noncoding rare variant associations of ...

In gene-centric analysis, STAARpipeline uses STAAR to group noncoding variants based on functional categories of genes and incorporate multiple ...

FAVOR: functional annotation of variants online resource and ...

... STAAR (12) and STAARpipeline. Several ... FAVOR offers a comprehensive solution for the application of whole genome variant functional ...

xihaoli/STAARpipeline-Tutorial - GitHub

Pre-step of association analysis using STAARpipeline. Generate Genomic Data Structure (GDS) file. R/Bioconductor package SeqArray provides functions ...

A framework for detecting noncoding rare variant associations of ...

We also propose SCANG (scan the genome)-STAAR, which uses dynamic window sizes and incorporates multiple functional annotations, in a non-gene- ...

Powerful, scalable and resource-efficient meta-analysis of rare ...

of SNVs, number of rare variants (pooled MAF < 1%) of the particular functional category in the gene; MetaSTAAR-O, MetaSTAAR-O P value; STAAR-O- ...

Rare variants in long non-coding RNAs are associated with blood ...

A total of 13 aggregated variant functional annotations were incorporated in STAAR ... xihaoli/STAARpipeline . Acknowledgments. Whole-genome ...

Scalable approaches for functional analyses of whole-genome ...

... indexed FG and annotation datasets that can be searched interactively via the web or programmatically queried using an application programming interface (API).

A framework for detecting noncoding rare variant associations of ...

STAARpipeline in application to the WGS association analysis of lipid traits on ... STAARpipeline is implemented as an open-source R package available at https:// ...

Rare variants in long non-coding RNAs are associated with blood ...

... index variant). Notably, 61 out of 83 signals (73%) were conditionally ... xihaoli/STAARpipeline. Page 32. 32. References. 1. Saxena, R., Voight, B.F. ...

Software

... (STAAR) procedure in whole-genome sequencing studies. STAAR is a general framework that incorporates both qualitative functional categories and quantitative ...

Xihao Li Group @ UNC-Chapel Hill

... function, and phenotypes (as part of NHGRI IGVF Consortium). About the PI. I ... Email: [email protected]. Xihao Li. Site inspired by Dr. Karl Broman and Dr ...