Haplotype Reference Consortium

Practical implications of imputations with large reference panels

Recently, the Haplotype Reference Consortium (HRC) released a large imputation panel that allows more accurate imputation of genetic variants.

(PDF) Haplotype reference consortium panel: Practical implications ...

PDF | Recently, the Haplotype Reference Consortium (HRC) released a large imputation panel that allows more accurate imputation of genetic ...

Genotype imputation for Han Chinese population using Haplotype ...

For that reason, huge efforts have been made worldwide to provide large reference panels, with the Haplotype Reference Consortium (HRC) being ...

Reference-based phasing using the Haplotype Reference ... - bioRxiv

Reference-based phasing using the Haplotype Reference Consortium panel. Po-Ru Loh, Petr Danecek, Pier Francesco Palamara, Christian ...

Genome Reference Consortium - an overview | ScienceDirect Topics

Sequenced Tübingen clones representing haplotypes differing from the relevant primary region are added as so-called alternate loci (ALT_REF_LOCI). The sequence ...

Genetic data - UK Biobank

... Haplotype Reference Consortium and UK10K + 1000 Genomes reference panels. You can view the full Axiom array SNP list by downloading the csv ...

Reference-based phasing using the Haplotype Reference ...

Haplotype phasing is a fundamental problem in medical and population genetics. Phasing is generally performed via statistical phasing in a genotyped cohort, ...

Release note HRC version 1.1 - Michigan Imputation Server 2

Or visit the project website http://www.haplotype-reference-consortium.org. Back to top. powered by Cloudgene and supported by the U.S. National Institutes ...

Practical implications of imputations with large reference panels.

Haplotype reference consortium panel: Practical implications of imputations with large reference panels. Home Research Research Publication Haplotype ...

Reference-based phasing using the Haplotype ... - UC Library Search

Po-Ru Loh, Alkes Price and colleagues present Eagle2, a reference-based phasing algorithm that allows for highly accurate and efficient phasing of genotypes ...

Reference-based phasing using the Haplotype ... - Libraries Search

Reference-based phasing using the Haplotype Reference Consortium panel. ; Loh, Po-Ru ; Danecek, Petr ; Palamara, Pier Francesco ; Fuchsberger, Christian ...

Human Genome Reference Program

... haplotype will be readily alignable to the reference. This would include the ... Human Pangenome Reference Consortium Website. Twitter logo. Follow. Human ...

Reference-based phasing using the Haplotype ... - ResearchGate

Request PDF | Reference-based phasing using the Haplotype Reference Consortium panel | Haplotype phasing is a fundamental problem in medical ...

A reference panel of 64976 haplotypes for genotype imputation.

Haplotype Reference Consortium. Abstract. We describe a reference panel of 64,976 human haplotypes at 39,235,157 SNPs constructed using whole-genome sequence ...

A One-Penny Imputed Genome from Next-Generation Reference ...

We compare Beagle 5.0 with Beagle 4.1, Impute4, Minimac3, and Minimac4 using 1000 Genomes Project data, Haplotype Reference Consortium data, and simulated data ...

Haplotypes and patches - Ensembl

The human genome assembly (GRCh38) and the mouse genome assembly (GRCm38) are maintained by the Genome Reference Consortium (GRC). In addition to the ...

Reference consortium - Project MinE

The Haplotype Reference Consortium (HRC) has created a reference panel of 64,976 haplotypes for genotype imputation. A haplotype is a group ...

Reference-based phasing using the Haplotype ... - LibrarySearch

... reference panels (such as the Haplotype Reference Consortium; HRC) using a new data structure based on the positional Burrows-Wheeler transform. We ...

Human Pangenome Reference Consortium Publication Summary 1

As a result, 1513 protein-coding genes overlap assembly gaps in at least one haplotype and 231 are recurrently disrupted or missing from five or more haplotypes ...

Where To Get The Genetic Map For The Haplotype Reference ...

I would now like to find genetic maps for the Haplotype Reference Consortium (HRC) as it includes more than 32 thousand samples, from 20 different cohorts.