Genotype imputation for Han Chinese population using Haplotype ...

Whereas in traditional genetic linkage and founder haplotype mapping studies geneticists expect to identify long stretches of shared chro- mosome inherited from ...

Genotype Imputation from Large Reference Panels

In this way, a study haplotype can be represented as a mosaic of short segments of related haplotypes found in the reference panel, enabling one ...

Evaluating the Accuracy of Imputation Methods in a Five-Way ...

Over the past decade, genotyping technologies for genome-wide association studies (GWAS) have allowed for extensive and rapid genotyping of ...

Genotype Imputation for Admixed Populations - Wiley Online Library

... in Toyko, Japan; and CHB for Han Chinese in Beijing, China. Let urn ... We note that for standard haplotypes-to-genotype imputation (i.e., using ...

PGG.Han: the Han Chinese genome database and analysis platform

Motoike,I.N. et al. (2018) Regional genetic differences among. Japanese populations and performance of genotype imputation using whole-genome ...

Deep Sequencing of MHC Region in Han Chinese Enables ...

... in both Chinese and European populations — as the most significantly associated allele. ... genotyping-based analysis that imputed missing ...

Haplotype Reference Consortium - Wellcome Sanger Institute

The reference panel can be used for genotype imputation and phasing in other cohorts, typically genome-wide association studies (GWAS), where genotypes are ...

CIDR Health Retirement Study Imputation Report - 1000 Genomes ...

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. ... Han Chinese in Beijing, China. CHB. 97. Han Chinese ...

Genotype Imputation for Latinos Using the HapMap and ... - Frontiers

When genotype reference panels become larger and larger and cover more populations, it is computationally impractical for one study to be able to cover all ...

Improved imputation accuracy of rare and low-frequency variants ...

... genetic variation in diverse human populations ... using sequence and genotype data to estimate haplotypes and unobserved genotypes.

A Flexible and Accurate Genotype Imputation Method for the Next ...

Once a study individual has sampled a new pair of haplotypes, the imputation step is broken into two parts: SNPs in U2 are imputed using information from both ...

Haplotypes and imputation | Introduction to genomics theory

We continue the beginner-friendly lecture series introducing basic concepts in #genomics, with a focus on single nucleotide polymorphism ...

Genotype imputation for Han Chinese population using Haplotype ...

Genotype imputation for Han Chinese population using Haplotype Reference Consortium as reference ; SpringerLink (Online service) · Liu, Lu, Yang, Sen, Li, Yun, ...